Saved in:
| Main Authors: | Lai, Jiaying, Liu, Yunzhou, Scharpf, Robert B., Karchin, Rachel |
|---|---|
| Format: | Preprint |
| Published: |
2024
|
| Subjects: | |
| Online Access: | https://arxiv.org/abs/2402.09599 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Single-cell genome and transcriptome sequencing without upfront whole-genome amplification reveals cell state plasticity of melanoma subclones.
by: Theunis, Koen, et al.
Published: (2025)
by: Theunis, Koen, et al.
Published: (2025)
Integrating Epigenetic and Phenotypic Features for Biological Age Estimation in Cancer Patients via Multimodal Learning
by: Jiang, Shuyue, et al.
Published: (2025)
by: Jiang, Shuyue, et al.
Published: (2025)
MicroTrace: A Lightweight R Tool for SNP-Based Pathogen Clustering in Outbreak Detection
by: Lai, Kaitao
Published: (2025)
by: Lai, Kaitao
Published: (2025)
AMRScan: A hybrid R and Nextflow toolkit for rapid antimicrobial resistance gene detection from sequencing data
by: Lai, Kaitao
Published: (2025)
by: Lai, Kaitao
Published: (2025)
SimOmics: A Simulation Toolkit for Multivariate and Multi-Omics Data
by: Lai, Kaitao
Published: (2025)
by: Lai, Kaitao
Published: (2025)
CARTEpigenoQC: A Quality Control Toolkit for CAR-T Single-Cell Epigenomic Data
by: Lai, Kaitao
Published: (2025)
by: Lai, Kaitao
Published: (2025)
HybridQC: Machine Learning-Augmented Quality Control for Single-Cell RNA-seq Data
by: Lai, Kaitao
Published: (2025)
by: Lai, Kaitao
Published: (2025)
ImmunoNX: a robust bioinformatics workflow to support personalized neoantigen vaccine trials
by: Singhal, Kartik, et al.
Published: (2025)
by: Singhal, Kartik, et al.
Published: (2025)
Agptools: a utility suite for editing genome assemblies
by: Ricemeyer, Edward S., et al.
Published: (2025)
by: Ricemeyer, Edward S., et al.
Published: (2025)
A Chromosome-level Assembly and Functional Genomic Resources for the Model Annelid Capitella teleta.
by: Davies, Billie E, et al.
Published: (2026)
by: Davies, Billie E, et al.
Published: (2026)
inMOTIFin: a lightweight end-to-end simulation software for regulatory sequences
by: Ferenc, Katalin, et al.
Published: (2025)
by: Ferenc, Katalin, et al.
Published: (2025)
CIBRA identifies genomic alterations with a system-wide impact on tumor biology
by: Lakbir, Soufyan, et al.
Published: (2024)
by: Lakbir, Soufyan, et al.
Published: (2024)
Computational approaches for virus host prediction: A review of methods and applications
by: Shang, Jiayu, et al.
Published: (2025)
by: Shang, Jiayu, et al.
Published: (2025)
A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater
by: Munteanu, Viorel, et al.
Published: (2023)
by: Munteanu, Viorel, et al.
Published: (2023)
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods
by: Consortium, The Critical Assessment of Genome Interpretation
Published: (2022)
by: Consortium, The Critical Assessment of Genome Interpretation
Published: (2022)
Association mapping for Striga resistance and agronomic‐related traits in sorghum
by: Wilbert T. Mutezo, et al.
Published: (2025)
by: Wilbert T. Mutezo, et al.
Published: (2025)
Supplementary information for "Factors influencing the accuracy and precision in dating single gene trees"
by: Louvel, Guillaume, et al.
Published: (2024)
by: Louvel, Guillaume, et al.
Published: (2024)
An improved, high yield method for isolating nuclei from individual zebrafish embryos for single-nucleus RNA sequencing
by: Rostomily, Clifford, et al.
Published: (2024)
by: Rostomily, Clifford, et al.
Published: (2024)
Categorization and analysis of 14 computational methods for estimating cell potency from single-cell RNA-seq data
by: Wang, Qingyang, et al.
Published: (2023)
by: Wang, Qingyang, et al.
Published: (2023)
Optimum recombination rates for genetic gains in simulated recurrent selection in empirical maize populations
by: Chandrappa Anilkumar, et al.
Published: (2026)
by: Chandrappa Anilkumar, et al.
Published: (2026)
Comparative Genomics of Transisthmian Damselfishes (Abudefduf saxatilis and A. troschelii).
by: Tracy, Claire B, et al.
Published: (2026)
by: Tracy, Claire B, et al.
Published: (2026)
Reference genome for the benthic marine diatom Psammoneis japonica: Bacterial associations and repeat-driven genome size evolution in diatoms.
by: Roberts, Wade R, et al.
Published: (2025)
by: Roberts, Wade R, et al.
Published: (2025)
Distinct classes of 21‐ and 24‐nt phasiRNAs suggests diverse mechanisms of biogenesis and function in rice anther development
by: Rachel Jouni, et al.
Published: (2025)
by: Rachel Jouni, et al.
Published: (2025)
Genome sequence of a marine threespine stickleback (Gasterosteus aculeatus) from Rabbit Slough in the Cook Inlet.
by: Au, Eric H, et al.
Published: (2025)
by: Au, Eric H, et al.
Published: (2025)
Phylogenomics establishes an Early Miocene reconstruction of reef vertebrate diversity.
by: Brownstein, Chase D, et al.
Published: (2025)
by: Brownstein, Chase D, et al.
Published: (2025)
A CD8 + T Cell Infiltration–Driven Prognostic Signature for Gastric Cancer: Bridging Tumor Immunity and Clinical Outcomes
by: Yiting Qian, et al.
Published: (2025)
by: Yiting Qian, et al.
Published: (2025)
Complete genome sequence of the marine mangrove fungus Sarcopodium sp.QM3-1 confirmed its high potential for antimicrobial activity.
by: Zhang, Wenzhou, et al.
Published: (2025)
by: Zhang, Wenzhou, et al.
Published: (2025)
Functional characterization of protein SUMOylation in the miRNA transcription regulation during heat stress in Arabidopsis
by: Simin Xia, et al.
Published: (2024)
by: Simin Xia, et al.
Published: (2024)
Primer C-VAE: An interpretable deep learning primer design method to detect emerging virus variants
by: Wang, Hanyu, et al.
Published: (2025)
by: Wang, Hanyu, et al.
Published: (2025)
Targets and strategies to design soybean seed composition traits
by: Ritesh Kumar, et al.
Published: (2025)
by: Ritesh Kumar, et al.
Published: (2025)
Polyphasic characterization and genomic insights of the cyanobacteria Aphanothece microscopica and A. stagnina from Southern Brazil with emphasis on fatty acid biosynthesis.
by: Delgado, Ronald Tarazona, et al.
Published: (2025)
by: Delgado, Ronald Tarazona, et al.
Published: (2025)
Population and herbarium genomics provide a comprehensive framework for a revision of Microcoleus (Cyanobacteria).
by: Skoupý, Svatopluk, et al.
Published: (2026)
by: Skoupý, Svatopluk, et al.
Published: (2026)
An Integrated Genomics Workflow Tool: Simulating Reads, Evaluating Read Alignments, and Optimizing Variant Calling Algorithms
by: Ismail, Fathima Nuzla, et al.
Published: (2025)
by: Ismail, Fathima Nuzla, et al.
Published: (2025)
Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance
by: Rezapour, Mostafa
Published: (2026)
by: Rezapour, Mostafa
Published: (2026)
Rethinking eukaryogenesis: genomic signatures suggest an aerobic host.
by: Du, Huan, et al.
Published: (2026)
by: Du, Huan, et al.
Published: (2026)
ChloroScan: Recovering plastid genome bins from metagenomic data
by: Tong, Yuhao, et al.
Published: (2025)
by: Tong, Yuhao, et al.
Published: (2025)
Genomes of the Caribbean reef-building corals Colpophyllia natans, Dendrogyra cylindrus, and Siderastrea siderea.
by: Locatelli, Nicolas S, et al.
Published: (2025)
by: Locatelli, Nicolas S, et al.
Published: (2025)
bioETH-PRS: Confidential Polygenic Risk Scoring without a Trusted Evaluator via Fully Homomorphic Encryption on a Programmable Blockchain
by: Provatas, Kimon Antonios, et al.
Published: (2026)
by: Provatas, Kimon Antonios, et al.
Published: (2026)
PhenotypeToGeneDownloaderR: automated multi-source retrieval and validation of phenotype-associated genes
by: Muneeb, Muhammad, et al.
Published: (2026)
by: Muneeb, Muhammad, et al.
Published: (2026)
A harmonized benchmarking framework for implementation-aware evaluation of 46 polygenic risk score tools across binary and continuous phenotypes
by: Muneeb, Muhammad, et al.
Published: (2026)
by: Muneeb, Muhammad, et al.
Published: (2026)
Similar Items
-
Single-cell genome and transcriptome sequencing without upfront whole-genome amplification reveals cell state plasticity of melanoma subclones.
by: Theunis, Koen, et al.
Published: (2025) -
Integrating Epigenetic and Phenotypic Features for Biological Age Estimation in Cancer Patients via Multimodal Learning
by: Jiang, Shuyue, et al.
Published: (2025) -
MicroTrace: A Lightweight R Tool for SNP-Based Pathogen Clustering in Outbreak Detection
by: Lai, Kaitao
Published: (2025) -
AMRScan: A hybrid R and Nextflow toolkit for rapid antimicrobial resistance gene detection from sequencing data
by: Lai, Kaitao
Published: (2025) -
SimOmics: A Simulation Toolkit for Multivariate and Multi-Omics Data
by: Lai, Kaitao
Published: (2025)