On the importance of assessing topological convergence in Bayesian phylogenetic inference
Fuente:
arXiv
Guardado en:
| Autores principales: | Brusselmans, Marius, Carvalho, Luiz Max, Hong, Samuel L., Gao, Jiansi, Matsen IV, Frederick A., Rambaut, Andrew, Lemey, Philippe, Suchard, Marc A., Dudas, Gytis, Baele, Guy |
|---|---|
| Formato: | Preprint |
| Publicado: |
2024
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| Materias: | |
| Acceso en línea: | |
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