TaxDiff: Taxonomic-Guided Diffusion Model for Protein Sequence Generation
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arXiv
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| Main Authors: | Zongying, Lin, Hao, Li, Liuzhenghao, Lv, Bin, Lin, Junwu, Zhang, Yu-Chian, Chen Calvin, Li, Yuan, Yonghong, Tian |
|---|---|
| Format: | Preprint |
| Published: |
2024
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| Subjects: | |
| Online Access: | |
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