RiNALMo: General-Purpose RNA Language Models Can Generalize Well on Structure Prediction Tasks
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arXiv
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| Main Authors: | Penić, Rafael Josip, Vlašić, Tin, Huber, Roland G., Wan, Yue, Šikić, Mile |
|---|---|
| Format: | Preprint |
| Published: |
2024
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| Subjects: | |
| Online Access: | |
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