Graph-based variant discovery reveals novel dynamics in the human microbiome
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arXiv
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| Main Authors: | Muralidharan, Harihara Subrahmaniam, Michaelis, Jacquelyn S, Ghurye, Jay, Treangen, Todd, Koren, Sergey, Fedarko, Marcus, Pop, Mihai |
|---|---|
| Format: | Preprint |
| Published: |
2024
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| Subjects: | |
| Online Access: | |
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