:: Library Catalog

Cover Image

Saved in:

Bibliographic Details
Main Authors:	Li, Qiuyun, Riehl, Manda
Format:	Preprint
Published:	2024
Subjects:	Biomolecules 92B05
Online Access:	https://arxiv.org/abs/2403.12827
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Compound Mutations in the Abl1 Kinase Cause Inhibitor Resistance by Shifting DFG Flip Mechanisms and Relative State Populations
by: da Silva, Gabriel Monteiro, et al.
Published: (2024)

A Standardized Benchmark for Machine-Learned Molecular Dynamics using Weighted Ensemble Sampling
by: Aghili, Alexander, et al.
Published: (2025)

Improving RNA secondary structure prediction via state inference with deep recurrent neural networks
by: Willmott, Devin, et al.
Published: (2019)

Computation of Minimum Numbers of Tile and Bond-Edge Types for DNA Self-Assembly of Select Archimedean Graphs
by: Merrithew, Tabitha, et al.
Published: (2025)

Modelling ion channels with a view towards identifiability
by: Siekmann, Ivo
Published: (2025)

Methods for Analyzing RNA Pseudoknots via Chord Diagrams and Intersection Graphs
by: Ibrahim, Rayan, et al.
Published: (2025)

Counterions in RNA structure: Structural bioinformatics analysis to identify the role of Mg2+ ions in base pair formation
by: Adhikari, Swati, et al.
Published: (2024)

Can geometric combinatorics improve RNA branching predictions?
by: Poznanović, Svetlana, et al.
Published: (2025)

Accessibility of Modified NK Fitness Landscapes
by: Nunns, Henry, et al.
Published: (2025)

CavDetect: A DBSCAN Algorithm based Novel Cavity Detection Model on Protein Structure
by: Adhikari, Swati, et al.
Published: (2024)

Pairing interacting protein sequences using masked language modeling
by: Lupo, Umberto, et al.
Published: (2023)

On Machine Learning Approaches for Protein-Ligand Binding Affinity Prediction
by: Schapin, Nikolai, et al.
Published: (2024)

Optimal Strategy for Stabilizing Protein Folding Intermediates
by: Wang, Mengshou, et al.
Published: (2024)

Corrected Hill Function in Stochastic Gene Regulatory Networks
by: Hernández-García, Manuel Eduardo, et al.
Published: (2023)

ApisTox: a new benchmark dataset for the classification of small molecules toxicity on honey bees
by: Adamczyk, Jakub, et al.
Published: (2024)

Dynamic optimization of volatile fatty acids to enrich biohydrogen production using a deep learning neural network
by: Mahmoodi-Eshkaftaki, Mahmood, et al.
Published: (2022)

Multiscale Jones Polynomial and Persistent Jones Polynomial for Knot Data Analysis
by: Song, Ruzhi, et al.
Published: (2024)

Engineering Supercomputing Platforms for Biomolecular Applications
by: Welch, Robert, et al.
Published: (2025)

Sheaf-theoretic representation of the proteolipid code
by: Kervin, Troy A.
Published: (2025)

OTMol: Robust Molecular Structure Comparison via Optimal Transport
by: Wei, Xiaoqi, et al.
Published: (2025)

A Nonlocal size modified Poisson-Boltzmann Model and Its Finite Element Solver for Protein in Multi-Species Ionic Solution
by: Xie, Dexuan, et al.
Published: (2025)

Unveiling Biological Models Through Turing Patterns
by: Li, Yuhan, et al.
Published: (2025)

Vertex-Edge Weighted Molecular Graphs: A study on topological indices and their relevance to physicochemical properties of drugs in use cancer treatment
by: Sorgun, Sezer, et al.
Published: (2024)

Mathematical modeling of tumor-immune interactions: methods, applications, and future perspectives
by: Li, Chenghang, et al.
Published: (2025)

A Novel Mathematical Model of Protein Interactions from the Perspective of Electron Delocalization
by: Morikawa, Naoto
Published: (2025)

On the Effect of Missing Transmission Chain Information in Agent-Based Models: Outcomes of Superspreading Events and Workplace Transmission
by: Korf, Sascha, et al.
Published: (2025)

Diagnosing Heteroskedasticity and Resolving Multicollinearity Paradoxes in Physicochemical Property Prediction
by: Malikussaid, et al.
Published: (2025)

Prediction of Binding Affinity for ErbB Inhibitors Using Deep Neural Network Model with Morgan Fingerprints as Features
by: Aman, La Ode
Published: (2025)

Mathematically tractable models of random phylogenetic networks: an overview of some recent developments
by: Bienvenu, François
Published: (2024)

VDAC Solvation Free Energy Calculation by a Nonuniform Size Modified Poisson-Boltzmann Ion Channel Model
by: Jemison, Liam, et al.
Published: (2024)

The Role of Biomarkers on Haemodynamics in Atherosclerotic Artery
by: Ray, Ruchira, et al.
Published: (2024)

Combinatorial Exploration of Multidrug Polyspecificity in Efflux Pumps
by: Cunden, Fabio Deelan, et al.
Published: (2024)

Generation of acyclic biological diagrams
by: Panayotopoulos, Antonios
Published: (2024)

Interplay between Foraging Choices and Population Growth Dynamics
by: Calvo-Monge, Jimmy, et al.
Published: (2024)

The role of topology on protein thermal stability
by: Especial, João N. C., et al.
Published: (2025)

Pattern formation within phenotype-structured chemotactic populations
by: Lorenzi, Tommaso, et al.
Published: (2025)

On a phenotype-structured Shigesada--Kawasaki--Teramoto model: Turing instability and pattern selection under fast phenotype switching
by: Cusseddu, Davide, et al.
Published: (2026)

Predicting the binding of small molecules to proteins through invariant representation of the molecular structure
by: Beccaria, R., et al.
Published: (2024)

Biological Modelling with Nonlocal Advection Diffusion Equations
by: Painter, Kevin J, et al.
Published: (2023)

A Dynamical Systems Analysis of Trap Music Exposure and School Dropout Among Costa Rican Adolescents
by: Rodríguez, Geraldine, et al.
Published: (2025)