Gene Regulatory Network Inference in the Presence of Dropouts: a Causal View
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arXiv
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| Main Authors: | Dai, Haoyue, Ng, Ignavier, Luo, Gongxu, Spirtes, Peter, Stojanov, Petar, Zhang, Kun |
|---|---|
| Format: | Preprint |
| Published: |
2024
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| Subjects: | |
| Online Access: | |
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