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Main Authors: Bi, Zhenyu, Dip, Sajib Acharjee, Hajialigol, Daniel, Kommu, Sindhura, Liu, Hanwen, Lu, Meng, Wang, Xuan
Format: Preprint
Published: 2024
Subjects:
Online Access:https://arxiv.org/abs/2403.15673
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author Bi, Zhenyu
Dip, Sajib Acharjee
Hajialigol, Daniel
Kommu, Sindhura
Liu, Hanwen
Lu, Meng
Wang, Xuan
author_facet Bi, Zhenyu
Dip, Sajib Acharjee
Hajialigol, Daniel
Kommu, Sindhura
Liu, Hanwen
Lu, Meng
Wang, Xuan
contents The capabilities of AI for biomedicine span a wide spectrum, from the atomic level, where it solves partial differential equations for quantum systems, to the molecular level, predicting chemical or protein structures, and further extending to societal predictions like infectious disease outbreaks. Recent advancements in large language models, exemplified by models like ChatGPT, have showcased significant prowess in natural language tasks, such as translating languages, constructing chatbots, and answering questions. When we consider biomedical data, we observe a resemblance to natural language in terms of sequences: biomedical literature and health records presented as text, biological sequences or sequencing data arranged in sequences, or sensor data like brain signals as time series. The question arises: Can we harness the potential of recent large language models to drive biomedical knowledge discoveries? In this survey, we will explore the application of large language models to three crucial categories of biomedical data: 1) textual data, 2) biological sequences, and 3) brain signals. Furthermore, we will delve into large language model challenges in biomedical research, including ensuring trustworthiness, achieving personalization, and adapting to multi-modal data representation
format Preprint
id arxiv_https___arxiv_org_abs_2403_15673
institution arXiv
publishDate 2024
record_format arxiv
spellingShingle AI for Biomedicine in the Era of Large Language Models
Bi, Zhenyu
Dip, Sajib Acharjee
Hajialigol, Daniel
Kommu, Sindhura
Liu, Hanwen
Lu, Meng
Wang, Xuan
Computation and Language
The capabilities of AI for biomedicine span a wide spectrum, from the atomic level, where it solves partial differential equations for quantum systems, to the molecular level, predicting chemical or protein structures, and further extending to societal predictions like infectious disease outbreaks. Recent advancements in large language models, exemplified by models like ChatGPT, have showcased significant prowess in natural language tasks, such as translating languages, constructing chatbots, and answering questions. When we consider biomedical data, we observe a resemblance to natural language in terms of sequences: biomedical literature and health records presented as text, biological sequences or sequencing data arranged in sequences, or sensor data like brain signals as time series. The question arises: Can we harness the potential of recent large language models to drive biomedical knowledge discoveries? In this survey, we will explore the application of large language models to three crucial categories of biomedical data: 1) textual data, 2) biological sequences, and 3) brain signals. Furthermore, we will delve into large language model challenges in biomedical research, including ensuring trustworthiness, achieving personalization, and adapting to multi-modal data representation
title AI for Biomedicine in the Era of Large Language Models
topic Computation and Language
url https://arxiv.org/abs/2403.15673