Distance Adjustment of a Graph Drawing Stress Model
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arXiv
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| Format: | Preprint |
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2024
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| _version_ | 1866913279474925568 |
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| author | Onoue, Yosuke |
| author_facet | Onoue, Yosuke |
| contents | Stress models are a promising approach for graph drawing. They minimize the weighted sum of the squared errors of the Euclidean and desired distances for each node pair. The desired distance typically uses the graph-theoretic distances obtained from the all-node pair shortest path problem. In a minimized stress function, the obtained coordinates are affected by the non-Euclidean property and the high-dimensionality of the graph-theoretic distance matrix. Therefore, the graph-theoretic distances used in stress models may not necessarily be the best metric for determining the node coordinates. In this study, we propose two different methods of adjusting the graph-theoretical distance matrix to a distance matrix suitable for graph drawing while preserving its structure. The first method is the application of eigenvalue decomposition to the inner product matrix obtained from the distance matrix and the obtainment of a new distance matrix by setting some eigenvalues with small absolute values to zero. The second approach is the usage of a stress model modified by adding a term that minimizes the Frobenius norm between the adjusted and original distance matrices. We perform computational experiments using several benchmark graphs to demonstrate that the proposed method improves some quality metrics, including the node resolution and the Gabriel graph property, when compared to conventional stress models. |
| format | Preprint |
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arxiv_https___arxiv_org_abs_2403_15811 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Distance Adjustment of a Graph Drawing Stress Model Onoue, Yosuke Data Structures and Algorithms Stress models are a promising approach for graph drawing. They minimize the weighted sum of the squared errors of the Euclidean and desired distances for each node pair. The desired distance typically uses the graph-theoretic distances obtained from the all-node pair shortest path problem. In a minimized stress function, the obtained coordinates are affected by the non-Euclidean property and the high-dimensionality of the graph-theoretic distance matrix. Therefore, the graph-theoretic distances used in stress models may not necessarily be the best metric for determining the node coordinates. In this study, we propose two different methods of adjusting the graph-theoretical distance matrix to a distance matrix suitable for graph drawing while preserving its structure. The first method is the application of eigenvalue decomposition to the inner product matrix obtained from the distance matrix and the obtainment of a new distance matrix by setting some eigenvalues with small absolute values to zero. The second approach is the usage of a stress model modified by adding a term that minimizes the Frobenius norm between the adjusted and original distance matrices. We perform computational experiments using several benchmark graphs to demonstrate that the proposed method improves some quality metrics, including the node resolution and the Gabriel graph property, when compared to conventional stress models. |
| title | Distance Adjustment of a Graph Drawing Stress Model |
| topic | Data Structures and Algorithms |
| url | https://arxiv.org/abs/2403.15811 |