Cycling on the Freeway: The Perilous State of Open Source Neuroscience Software
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arXiv
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| Main Authors: | , , , , , , |
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| Format: | Preprint |
| Published: |
2024
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| _version_ | 1866929294145486848 |
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| author | Westner, Britta U. McCloy, Daniel R. Larson, Eric Gramfort, Alexandre Katz, Daniel S. Smith, Arfon M. co-signees, invited |
| author_facet | Westner, Britta U. McCloy, Daniel R. Larson, Eric Gramfort, Alexandre Katz, Daniel S. Smith, Arfon M. co-signees, invited |
| contents | Most scientists need software to perform their research (Barker et al., 2020; Carver et al., 2022; Hettrick, 2014; Hettrick et al., 2014; Switters and Osimo, 2019), and neuroscientists are no exception. Whether we work with reaction times, electrophysiological signals, or magnetic resonance imaging data, we rely on software to acquire, analyze, and statistically evaluate the raw data we obtain - or to generate such data if we work with simulations. In recent years there has been a shift toward relying on free, open-source scientific software (FOSSS) for neuroscience data analysis (Poldrack et al., 2019), in line with the broader open science movement in academia (McKiernan et al., 2016) and wider industry trends (Eghbal, 2016). Importantly, FOSSS is typically developed by working scientists (not professional software developers) which sets up a precarious situation given the nature of the typical academic workplace (wherein academics, especially in their early careers, are on short and fixed term contracts). In this paper, we will argue that the existing ecosystem of neuroscientific open source software is brittle, and discuss why and how the neuroscience community needs to come together to ensure a healthy growth of our software landscape to the benefit of all. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2403_19394 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Cycling on the Freeway: The Perilous State of Open Source Neuroscience Software Westner, Britta U. McCloy, Daniel R. Larson, Eric Gramfort, Alexandre Katz, Daniel S. Smith, Arfon M. co-signees, invited Computers and Society Other Quantitative Biology Most scientists need software to perform their research (Barker et al., 2020; Carver et al., 2022; Hettrick, 2014; Hettrick et al., 2014; Switters and Osimo, 2019), and neuroscientists are no exception. Whether we work with reaction times, electrophysiological signals, or magnetic resonance imaging data, we rely on software to acquire, analyze, and statistically evaluate the raw data we obtain - or to generate such data if we work with simulations. In recent years there has been a shift toward relying on free, open-source scientific software (FOSSS) for neuroscience data analysis (Poldrack et al., 2019), in line with the broader open science movement in academia (McKiernan et al., 2016) and wider industry trends (Eghbal, 2016). Importantly, FOSSS is typically developed by working scientists (not professional software developers) which sets up a precarious situation given the nature of the typical academic workplace (wherein academics, especially in their early careers, are on short and fixed term contracts). In this paper, we will argue that the existing ecosystem of neuroscientific open source software is brittle, and discuss why and how the neuroscience community needs to come together to ensure a healthy growth of our software landscape to the benefit of all. |
| title | Cycling on the Freeway: The Perilous State of Open Source Neuroscience Software |
| topic | Computers and Society Other Quantitative Biology |
| url | https://arxiv.org/abs/2403.19394 |