High-dimensional covariance regression with application to co-expression QTL detection
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arXiv
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| Hauptverfasser: | , |
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| Format: | Preprint |
| Veröffentlicht: |
2024
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| _version_ | 1866913859794632704 |
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| author | Kim, Rakheon Zhang, Jingfei |
| author_facet | Kim, Rakheon Zhang, Jingfei |
| contents | While covariance matrices have been widely studied in many scientific fields, relatively limited progress has been made on estimating conditional covariances that permits a large covariance matrix to vary with high-dimensional subject-level covariates. In this paper, we present a new sparse covariance regression framework that models the covariance matrix as a function of subject-level covariates. In the context of co-expression quantitative trait locus (QTL) studies, our method can be used to determine if and how gene co-expressions vary with genetic variations. To accommodate high-dimensional responses and covariates, we stipulate a combined sparsity structure that encourages covariates with non-zero effects and edges that are modulated by these covariates to be simultaneously sparse. We approach parameter estimation with a blockwise coordinate descent algorithm, and investigate the $\ell_1$ and $\ell_2$ convergence rate of the estimated parameters. In addition, we propose a computationally efficient debiased inference procedure for uncertainty quantification. The efficacy of the proposed method is demonstrated through numerical experiments and an application to a gene co-expression network study with brain cancer patients. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2404_02093 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | High-dimensional covariance regression with application to co-expression QTL detection Kim, Rakheon Zhang, Jingfei Methodology While covariance matrices have been widely studied in many scientific fields, relatively limited progress has been made on estimating conditional covariances that permits a large covariance matrix to vary with high-dimensional subject-level covariates. In this paper, we present a new sparse covariance regression framework that models the covariance matrix as a function of subject-level covariates. In the context of co-expression quantitative trait locus (QTL) studies, our method can be used to determine if and how gene co-expressions vary with genetic variations. To accommodate high-dimensional responses and covariates, we stipulate a combined sparsity structure that encourages covariates with non-zero effects and edges that are modulated by these covariates to be simultaneously sparse. We approach parameter estimation with a blockwise coordinate descent algorithm, and investigate the $\ell_1$ and $\ell_2$ convergence rate of the estimated parameters. In addition, we propose a computationally efficient debiased inference procedure for uncertainty quantification. The efficacy of the proposed method is demonstrated through numerical experiments and an application to a gene co-expression network study with brain cancer patients. |
| title | High-dimensional covariance regression with application to co-expression QTL detection |
| topic | Methodology |
| url | https://arxiv.org/abs/2404.02093 |