ApisTox: a new benchmark dataset for the classification of small molecules toxicity on honey bees

Fuente: arXiv
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Autori principali: Adamczyk, Jakub, Poziemski, Jakub, Siedlecki, Pawel
Natura: Preprint
Pubblicazione: 2024
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author Adamczyk, Jakub
Poziemski, Jakub
Siedlecki, Pawel
author_facet Adamczyk, Jakub
Poziemski, Jakub
Siedlecki, Pawel
contents The global decline in bee populations poses significant risks to agriculture, biodiversity, and environmental stability. To bridge the gap in existing data, we introduce ApisTox, a comprehensive dataset focusing on the toxicity of pesticides to honey bees (Apis mellifera). This dataset combines and leverages data from existing sources such as ECOTOX and PPDB, providing an extensive, consistent, and curated collection that surpasses the previous datasets. ApisTox incorporates a wide array of data, including toxicity levels for chemicals, details such as time of their publication in literature, and identifiers linking them to external chemical databases. This dataset may serve as an important tool for environmental and agricultural research, but also can support the development of policies and practices aimed at minimizing harm to bee populations. Finally, ApisTox offers a unique resource for benchmarking molecular property prediction methods on agrochemical compounds, facilitating advancements in both environmental science and cheminformatics. This makes it a valuable tool for both academic research and practical applications in bee conservation.
format Preprint
id arxiv_https___arxiv_org_abs_2404_16196
institution arXiv
publishDate 2024
record_format arxiv
spellingShingle ApisTox: a new benchmark dataset for the classification of small molecules toxicity on honey bees
Adamczyk, Jakub
Poziemski, Jakub
Siedlecki, Pawel
Quantitative Methods
Artificial Intelligence
Machine Learning
Biomolecules
92-04
J.3
The global decline in bee populations poses significant risks to agriculture, biodiversity, and environmental stability. To bridge the gap in existing data, we introduce ApisTox, a comprehensive dataset focusing on the toxicity of pesticides to honey bees (Apis mellifera). This dataset combines and leverages data from existing sources such as ECOTOX and PPDB, providing an extensive, consistent, and curated collection that surpasses the previous datasets. ApisTox incorporates a wide array of data, including toxicity levels for chemicals, details such as time of their publication in literature, and identifiers linking them to external chemical databases. This dataset may serve as an important tool for environmental and agricultural research, but also can support the development of policies and practices aimed at minimizing harm to bee populations. Finally, ApisTox offers a unique resource for benchmarking molecular property prediction methods on agrochemical compounds, facilitating advancements in both environmental science and cheminformatics. This makes it a valuable tool for both academic research and practical applications in bee conservation.
title ApisTox: a new benchmark dataset for the classification of small molecules toxicity on honey bees
topic Quantitative Methods
Artificial Intelligence
Machine Learning
Biomolecules
92-04
J.3
url https://arxiv.org/abs/2404.16196