Advanced analysis of single-molecule spectroscopic data
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arXiv
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| Autores principales: | , , |
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| Formato: | Preprint |
| Publicado: |
2024
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| _version_ | 1866929331487375360 |
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| author | Botha, Joshua L. van Heerden, Bertus Krüger, Tjaart P. J. |
| author_facet | Botha, Joshua L. van Heerden, Bertus Krüger, Tjaart P. J. |
| contents | We present Full SMS, a multipurpose graphical user interface (GUI)-based software package for analysing single-molecule spectroscopy (SMS) data. SMS typically delivers multiparameter data -- such as fluorescence brightness, lifetime, and spectra -- of molecular- or nanometre-scale particles such as single dye molecules, quantum dots, or fluorescently labelled biological macromolecules. Full SMS allows an unbiased statistical analysis of fluorescence brightness through level resolution and clustering, analysis of fluorescence lifetimes through decay fitting, as well as the calculation of second-order correlation functions and the display of fluorescence spectra and raster-scan images. Additional features include extensive data filtering options, a custom HDF5-based file format, and flexible data export options. The software is open source and written in Python but GUI-based so it may be used without any programming knowledge. A multi-process architecture was employed for computational efficiency. The software is also designed to be easily extendable to include additional import data types and analysis capabilities. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2404_18945 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Advanced analysis of single-molecule spectroscopic data Botha, Joshua L. van Heerden, Bertus Krüger, Tjaart P. J. Biological Physics Chemical Physics Data Analysis, Statistics and Probability Optics We present Full SMS, a multipurpose graphical user interface (GUI)-based software package for analysing single-molecule spectroscopy (SMS) data. SMS typically delivers multiparameter data -- such as fluorescence brightness, lifetime, and spectra -- of molecular- or nanometre-scale particles such as single dye molecules, quantum dots, or fluorescently labelled biological macromolecules. Full SMS allows an unbiased statistical analysis of fluorescence brightness through level resolution and clustering, analysis of fluorescence lifetimes through decay fitting, as well as the calculation of second-order correlation functions and the display of fluorescence spectra and raster-scan images. Additional features include extensive data filtering options, a custom HDF5-based file format, and flexible data export options. The software is open source and written in Python but GUI-based so it may be used without any programming knowledge. A multi-process architecture was employed for computational efficiency. The software is also designed to be easily extendable to include additional import data types and analysis capabilities. |
| title | Advanced analysis of single-molecule spectroscopic data |
| topic | Biological Physics Chemical Physics Data Analysis, Statistics and Probability Optics |
| url | https://arxiv.org/abs/2404.18945 |