MaRDIFlow: A CSE workflow framework for abstracting meta-data from FAIR computational experiments
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arXiv
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| Format: | Preprint |
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2024
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| _version_ | 1866911860725383168 |
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| author | Veluvali, Pavan L. Heiland, Jan Benner, Peter |
| author_facet | Veluvali, Pavan L. Heiland, Jan Benner, Peter |
| contents | Numerical algorithms and computational tools are instrumental in navigating and addressing complex simulation and data processing tasks. The exponential growth of metadata and parameter-driven simulations has led to an increasing demand for automated workflows that can replicate computational experiments across platforms. In general, a computational workflow is defined as a sequential description for accomplishing a scientific objective, often described by tasks and their associated data dependencies. If characterized through input-output relation, workflow components can be structured to allow interchangeable utilization of individual tasks and their accompanying metadata. In the present work, we develop a novel computational framework, namely, MaRDIFlow, that focuses on the automation of abstracting meta-data embedded in an ontology of mathematical objects. This framework also effectively addresses the inherent execution and environmental dependencies by incorporating them into multi-layered descriptions. Additionally, we demonstrate a working prototype with example use cases and methodically integrate them into our workflow tool and data provenance framework. Furthermore, we show how to best apply the FAIR principles to computational workflows, such that abstracted components are Findable, Accessible, Interoperable, and Reusable in nature. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2405_00028 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | MaRDIFlow: A CSE workflow framework for abstracting meta-data from FAIR computational experiments Veluvali, Pavan L. Heiland, Jan Benner, Peter Distributed, Parallel, and Cluster Computing 68V30 Numerical algorithms and computational tools are instrumental in navigating and addressing complex simulation and data processing tasks. The exponential growth of metadata and parameter-driven simulations has led to an increasing demand for automated workflows that can replicate computational experiments across platforms. In general, a computational workflow is defined as a sequential description for accomplishing a scientific objective, often described by tasks and their associated data dependencies. If characterized through input-output relation, workflow components can be structured to allow interchangeable utilization of individual tasks and their accompanying metadata. In the present work, we develop a novel computational framework, namely, MaRDIFlow, that focuses on the automation of abstracting meta-data embedded in an ontology of mathematical objects. This framework also effectively addresses the inherent execution and environmental dependencies by incorporating them into multi-layered descriptions. Additionally, we demonstrate a working prototype with example use cases and methodically integrate them into our workflow tool and data provenance framework. Furthermore, we show how to best apply the FAIR principles to computational workflows, such that abstracted components are Findable, Accessible, Interoperable, and Reusable in nature. |
| title | MaRDIFlow: A CSE workflow framework for abstracting meta-data from FAIR computational experiments |
| topic | Distributed, Parallel, and Cluster Computing 68V30 |
| url | https://arxiv.org/abs/2405.00028 |