:: Library Catalog

Cover Image

Saved in:

Bibliographic Details
Main Authors:	Mir, Dilawar Ahmad, Ma, Zhengxin, Horrocks, Jordan, Rogers, Aric N
Format:	Preprint
Published:	2024
Subjects:	Molecular Networks
Online Access:	https://arxiv.org/abs/2405.01664
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

TRENDY: Gene Regulatory Network Inference Enhanced by Transformer
by: Tian, Xueying, et al.
Published: (2024)

WENDY: Covariance Dynamics Based Gene Regulatory Network Inference
by: Wang, Yue, et al.
Published: (2024)

QWENDY: Gene Regulatory Network Inference by Quadruple Covariance Matrices
by: Wang, Yue, et al.
Published: (2025)

Modeling Dynamics, Cell Type Specificity, and Perturbations in Gene Regulatory Networks
by: Shin, Junha, et al.
Published: (2026)

DRAGON: Determining Regulatory Associations using Graphical models on multi-Omic Networks
by: Shutta, Katherine H., et al.
Published: (2021)

The Environment-Dependent Regulatory Landscape of the E. coli Genome
by: Röschinger, Tom, et al.
Published: (2025)

Counting Subnetworks Under Gene Duplication in Genetic Regulatory Networks
by: Scruse, Ashley, et al.
Published: (2024)

Translating and evaluating single-cell Boolean network interventions in the multiscale setting
by: Metzcar, John, et al.
Published: (2025)

Machine Learning Methods for Gene Regulatory Network Inference
by: Hegde, Akshata, et al.
Published: (2025)

On Hybrid Gene Regulatory Networks
by: Wurm, Adrian, et al.
Published: (2024)

Biological Regulatory Network Inference through Circular Causal Structure Learning
by: Jiang, Hongyang, et al.
Published: (2025)

KINDLE: Knowledge-Guided Distillation for Prior-Free Gene Regulatory Network Inference
by: Peng, Rui, et al.
Published: (2025)

GRiNS: A Python Library for Simulating Gene Regulatory Network Dynamics
by: Harlapur, Pradyumna, et al.
Published: (2025)

On Networks and their Applications: Stability of Gene Regulatory Networks and Gene Function Prediction using Autoencoders
by: Coban, Hamza
Published: (2024)

Predictive-Switching Control of Stochastic Gene Regulatory Networks: A Contractive PIDE Framework
by: Fernández, Christian, et al.
Published: (2026)

Tensor Network based Gene Regulatory Network Inference for Single-Cell Transcriptomic Data
by: Larrarte, Olatz Sanz, et al.
Published: (2025)

Quantifying Ranking Instability Across Evaluation Protocol Axes in Gene Regulatory Network Benchmarking
by: Kendiukhov, Ihor
Published: (2026)

Markovian Promoter Models: A Mechanistic Alternative to Hill Functions in Gene Regulatory Networks
by: Wu, Tianyu
Published: (2025)

Logistic Gene Regulatory Networks: Prevention of Expression Shutdown, and Numerical Stability Beyond Hill Function
by: Belgacem, Ismail
Published: (2026)

Relating biomarkers and phenotypes using dynamical trap spaces
by: Pastva, Samuel, et al.
Published: (2026)

Hypothesizing the Transmission of Smells: Six Methods of Chemical Travel
by: Ahmad, Usman
Published: (2024)

From Regression to Classification: Exploring the Benefits of Categorical Representations of Energy in MLIPs
by: Ali, Ahmad
Published: (2025)

Irreversibility in Bacterial Regulatory Networks
by: Zhao, Yi, et al.
Published: (2024)

GPU-accelerated Modeling of Biological Regulatory Networks
by: Reimer, Joyce, et al.
Published: (2025)

Optimal network sizes for most robust Turing patterns
by: Shaberi, Hazlam S. Ahmad, et al.
Published: (2024)

Gene Regulatory Network Inference in the Presence of Dropouts: a Causal View
by: Dai, Haoyue, et al.
Published: (2024)

Oscillation Criteria in Large-Scale Gene Regulatory Networks with Intrinsic Fluctuations
by: Hernández-García, Manuel Eduardo, et al.
Published: (2026)

Piezo1 Decodes Mechanical Forces via Allosteric Network Reprogramming
by: Zhang, Yuling, et al.
Published: (2025)

Corrected Hill Function in Stochastic Gene Regulatory Networks
by: Hernández-García, Manuel Eduardo, et al.
Published: (2023)

Characterising Soil Eukaryotic Diversity From NEON Metagenomics Datasets
by: Leena Vilonen, et al.
Published: (2025)

A Gene Ranking Framework Enhances the Design Efficiency of Genome-Scale Constraint-Based Metabolic Networks under Time Limits
by: Ma, Yier, et al.
Published: (2025)

Time-Varying Network Driver Estimation (TNDE) Quantifies Stage-Specific Regulatory Effects From Single-Cell Snapshots
by: Li, Jiaxin, et al.
Published: (2025)

A Comparative Analysis of Long‐Term Effective Population Sizes Across Eukaryotes
by: Loveday Lewin, et al.
Published: (2026)

Identifying the Attractors of Gene Regulatory Networks from Expression Data under Uncertainty: An Interpretable Approach
by: Rowhanimanesh, Alireza
Published: (2024)

Noise-induced stabilization in a chemical reaction network without boundary effects
by: Agazzi, Andrea, et al.
Published: (2025)

Modeling Plant Action Potentials under Photoperiod Stress via Hodgkin-Huxley Dynamics
by: Bekkari, Imen, et al.
Published: (2025)

CANA v1.0.0 and schematodes: efficient quantification of symmetry in Boolean automata
by: Marcus, Austin M., et al.
Published: (2024)

Accelerating Machine Learning Systems via Category Theory: Applications to Spherical Attention for Gene Regulatory Networks
by: Abbott, Vincent, et al.
Published: (2025)

A Novel Quantum Algorithm for Efficient Attractor Search in Gene Regulatory Networks
by: Rossini, Mirko, et al.
Published: (2024)

ProCaliper: functional and structural analysis, visualization, and annotation of proteins
by: Rozum, Jordan C., et al.
Published: (2025)