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Main Authors: Khalid, Mutahira, Rahman, Raihana, Abbas, Asim, Kumari, Sushama, Wajahat, Iram, Bukhari, Syed Ahmad Chan
Format: Preprint
Published: 2024
Subjects:
Online Access:https://arxiv.org/abs/2405.02321
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author Khalid, Mutahira
Rahman, Raihana
Abbas, Asim
Kumari, Sushama
Wajahat, Iram
Bukhari, Syed Ahmad Chan
author_facet Khalid, Mutahira
Rahman, Raihana
Abbas, Asim
Kumari, Sushama
Wajahat, Iram
Bukhari, Syed Ahmad Chan
contents Knowledge graphs (KGs) serve as powerful tools for organizing and representing structured knowledge. While their utility is widely recognized, challenges persist in their automation and completeness. Despite efforts in automation and the utilization of expert-created ontologies, gaps in connectivity remain prevalent within KGs. In response to these challenges, we propose an innovative approach termed ``Medical Knowledge Graph Automation (M-KGA)". M-KGA leverages user-provided medical concepts and enriches them semantically using BioPortal ontologies, thereby enhancing the completeness of knowledge graphs through the integration of pre-trained embeddings. Our approach introduces two distinct methodologies for uncovering hidden connections within the knowledge graph: a cluster-based approach and a node-based approach. Through rigorous testing involving 100 frequently occurring medical concepts in Electronic Health Records (EHRs), our M-KGA framework demonstrates promising results, indicating its potential to address the limitations of existing knowledge graph automation techniques.
format Preprint
id arxiv_https___arxiv_org_abs_2405_02321
institution arXiv
publishDate 2024
record_format arxiv
spellingShingle Accelerating Medical Knowledge Discovery through Automated Knowledge Graph Generation and Enrichment
Khalid, Mutahira
Rahman, Raihana
Abbas, Asim
Kumari, Sushama
Wajahat, Iram
Bukhari, Syed Ahmad Chan
Artificial Intelligence
Information Retrieval
Knowledge graphs (KGs) serve as powerful tools for organizing and representing structured knowledge. While their utility is widely recognized, challenges persist in their automation and completeness. Despite efforts in automation and the utilization of expert-created ontologies, gaps in connectivity remain prevalent within KGs. In response to these challenges, we propose an innovative approach termed ``Medical Knowledge Graph Automation (M-KGA)". M-KGA leverages user-provided medical concepts and enriches them semantically using BioPortal ontologies, thereby enhancing the completeness of knowledge graphs through the integration of pre-trained embeddings. Our approach introduces two distinct methodologies for uncovering hidden connections within the knowledge graph: a cluster-based approach and a node-based approach. Through rigorous testing involving 100 frequently occurring medical concepts in Electronic Health Records (EHRs), our M-KGA framework demonstrates promising results, indicating its potential to address the limitations of existing knowledge graph automation techniques.
title Accelerating Medical Knowledge Discovery through Automated Knowledge Graph Generation and Enrichment
topic Artificial Intelligence
Information Retrieval
url https://arxiv.org/abs/2405.02321