Enhancing Generalized Fetal Brain MRI Segmentation using A Cascade Network with Depth-wise Separable Convolution and Attention Mechanism
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arXiv
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| Auteurs principaux: | , |
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| Format: | Preprint |
| Publié: |
2024
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| _version_ | 1866911885837729792 |
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| author | Cai, Zhigao Zhao, Xing-Ming |
| author_facet | Cai, Zhigao Zhao, Xing-Ming |
| contents | Automatic segmentation of the fetal brain is still challenging due to the health state of fetal development, motion artifacts, and variability across gestational ages, since existing methods rely on high-quality datasets of healthy fetuses. In this work, we propose a novel cascade network called CasUNext to enhance the accuracy and generalization of fetal brain MRI segmentation. CasUNext incorporates depth-wise separable convolution, attention mechanisms, and a two-step cascade architecture for efficient high-precision segmentation. The first network localizes the fetal brain region, while the second network focuses on detailed segmentation. We evaluate CasUNext on 150 fetal MRI scans between 20 to 36 weeks from two scanners made by Philips and Siemens including axial, coronal, and sagittal views, and also validated on a dataset of 50 abnormal fetuses. Results demonstrate that CasUNext achieves improved segmentation performance compared to U-Nets and other state-of-the-art approaches. It obtains an average Dice coefficient of 96.1% and mean intersection over union of 95.9% across diverse scenarios. CasUNext shows promising capabilities for handling the challenges of multi-view fetal MRI and abnormal cases, which could facilitate various quantitative analyses and apply to multi-site data. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2405_15205 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Enhancing Generalized Fetal Brain MRI Segmentation using A Cascade Network with Depth-wise Separable Convolution and Attention Mechanism Cai, Zhigao Zhao, Xing-Ming Image and Video Processing Computer Vision and Pattern Recognition Automatic segmentation of the fetal brain is still challenging due to the health state of fetal development, motion artifacts, and variability across gestational ages, since existing methods rely on high-quality datasets of healthy fetuses. In this work, we propose a novel cascade network called CasUNext to enhance the accuracy and generalization of fetal brain MRI segmentation. CasUNext incorporates depth-wise separable convolution, attention mechanisms, and a two-step cascade architecture for efficient high-precision segmentation. The first network localizes the fetal brain region, while the second network focuses on detailed segmentation. We evaluate CasUNext on 150 fetal MRI scans between 20 to 36 weeks from two scanners made by Philips and Siemens including axial, coronal, and sagittal views, and also validated on a dataset of 50 abnormal fetuses. Results demonstrate that CasUNext achieves improved segmentation performance compared to U-Nets and other state-of-the-art approaches. It obtains an average Dice coefficient of 96.1% and mean intersection over union of 95.9% across diverse scenarios. CasUNext shows promising capabilities for handling the challenges of multi-view fetal MRI and abnormal cases, which could facilitate various quantitative analyses and apply to multi-site data. |
| title | Enhancing Generalized Fetal Brain MRI Segmentation using A Cascade Network with Depth-wise Separable Convolution and Attention Mechanism |
| topic | Image and Video Processing Computer Vision and Pattern Recognition |
| url | https://arxiv.org/abs/2405.15205 |