GeneAgent: Self-verification Language Agent for Gene Set Knowledge Discovery using Domain Databases
Fuente:
arXiv
Saved in:
| Main Authors: | Wang, Zhizheng, Jin, Qiao, Wei, Chih-Hsuan, Tian, Shubo, Lai, Po-Ting, Zhu, Qingqing, Day, Chi-Ping, Ross, Christina, Lu, Zhiyong |
|---|---|
| Format: | Preprint |
| Published: |
2024
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Knowledge-guided Contextual Gene Set Analysis Using Large Language Models
by: Wang, Zhizheng, et al.
Published: (2025)
by: Wang, Zhizheng, et al.
Published: (2025)
Gene-R1: Reasoning with Data-Augmented Lightweight LLMs for Gene Set Analysis
by: Wang, Zhizheng, et al.
Published: (2025)
by: Wang, Zhizheng, et al.
Published: (2025)
PubTator 3.0: an AI-powered Literature Resource for Unlocking Biomedical Knowledge
by: Wei, Chih-Hsuan, et al.
Published: (2024)
by: Wei, Chih-Hsuan, et al.
Published: (2024)
Enhancing Biomedical Relation Extraction with Directionality
by: Lai, Po-Ting, et al.
Published: (2025)
by: Lai, Po-Ting, et al.
Published: (2025)
MedHopQA: A Disease-Centered Multi-Hop Reasoning Benchmark and Evaluation Framework for LLM-Based Biomedical Question Answering
by: Islamaj, Rezarta, et al.
Published: (2026)
by: Islamaj, Rezarta, et al.
Published: (2026)
Large Language Models Meet Biomedical Knowledge Graphs for Mechanistically Grounded Therapeutic Prioritization
by: Wei, Chih-Hsuan, et al.
Published: (2026)
by: Wei, Chih-Hsuan, et al.
Published: (2026)
HypoGeneAgent: A Hypothesis Language Agent for Gene-Set Cluster Resolution Selection Using Perturb-seq Datasets
by: Yuan, Ying, et al.
Published: (2025)
by: Yuan, Ying, et al.
Published: (2025)
GeneGPT: Augmenting Large Language Models with Domain Tools for Improved Access to Biomedical Information
by: Jin, Qiao, et al.
Published: (2023)
by: Jin, Qiao, et al.
Published: (2023)
FROAV: A Framework for RAG Observation and Agent Verification -- Lowering the Barrier to LLM Agent Research
by: Lin, Tzu-Hsuan, et al.
Published: (2026)
by: Lin, Tzu-Hsuan, et al.
Published: (2026)
Revisiting Gene Ontology Knowledge Discovery with Hierarchical Feature Selection and Virtual Study Group of AI Agents
by: Wan, Cen, et al.
Published: (2026)
by: Wan, Cen, et al.
Published: (2026)
AgentMD: Empowering Language Agents for Risk Prediction with Large-Scale Clinical Tool Learning
by: Jin, Qiao, et al.
Published: (2024)
by: Jin, Qiao, et al.
Published: (2024)
Leveraging Multi-AI Agents for Cross-Domain Knowledge Discovery
by: Aryal, Shiva, et al.
Published: (2024)
by: Aryal, Shiva, et al.
Published: (2024)
Opportunities and Challenges for ChatGPT and Large Language Models in Biomedicine and Health
by: Tian, Shubo, et al.
Published: (2023)
by: Tian, Shubo, et al.
Published: (2023)
Knowledge Discovery in Databases.
by: Norton, M. Jay
Published: (1999)
by: Norton, M. Jay
Published: (1999)
GeneSUM: Large Language Model-based Gene Summary Extraction
by: Chen, Zhijian, et al.
Published: (2024)
by: Chen, Zhijian, et al.
Published: (2024)
GenoMAS: A Multi-Agent Framework for Scientific Discovery via Code-Driven Gene Expression Analysis
by: Liu, Haoyang, et al.
Published: (2025)
by: Liu, Haoyang, et al.
Published: (2025)
Systematic Identification of Candidate Genes for Inherited Retinal Disease Gene Therapy Integrating Worldwide IRD Cohort and Single‐Cell Analysis
by: Ching-Yun Wang, et al.
Published: (2025)
by: Ching-Yun Wang, et al.
Published: (2025)
Wheat NLR Genes: Genomic Diversity, Functional Mechanisms, and Advances in Resistance Gene Discovery
by: Hakim Zamir, et al.
Published: (2026)
by: Hakim Zamir, et al.
Published: (2026)
To Tweak or Not to Tweak. How Exploiting Flexibilities in Gene Set Analysis Leads to Overoptimism
by: Milena Wünsch, et al.
Published: (2024)
by: Milena Wünsch, et al.
Published: (2024)
Weighted Diversified Sampling for Efficient Data-Driven Single-Cell Gene-Gene Interaction Discovery
by: Wu, Yifan, et al.
Published: (2024)
by: Wu, Yifan, et al.
Published: (2024)
PhenoKG: Knowledge Graph-Driven Gene Discovery and Patient Insights from Phenotypes Alone
by: Zaripova, Kamilia, et al.
Published: (2025)
by: Zaripova, Kamilia, et al.
Published: (2025)
Beyond Multiple-Choice Accuracy: Real-World Challenges of Implementing Large Language Models in Healthcare
by: Yang, Yifan, et al.
Published: (2024)
by: Yang, Yifan, et al.
Published: (2024)
LLM-based Agents for Automated Confounder Discovery and Subgroup Analysis in Causal Inference
by: Lee, Po-Han, et al.
Published: (2025)
by: Lee, Po-Han, et al.
Published: (2025)
Genome‐Wide Identification of the MYB Gene Family and Discovery of Key Genes Regulating Rind Color in Watermelon
by: Xurui Yang, et al.
Published: (2026)
by: Xurui Yang, et al.
Published: (2026)
Gene activity fully predicts transcriptional bursting dynamics
by: Chen, Po-Ta, et al.
Published: (2023)
by: Chen, Po-Ta, et al.
Published: (2023)
Caspase‐7 and Vitamin D Receptor Gene as Key Genes of Hypertension Caused by Pyroptosis in Human
by: Yu‐Xuan Lou, et al.
Published: (2025)
by: Yu‐Xuan Lou, et al.
Published: (2025)
An Overview on Disease Burden and Management of Respiratory Syncytial Virus Infections in Older Adults in the Asia‐Pacific Region
by: Chih‐Cheng Lai, et al.
Published: (2024)
by: Chih‐Cheng Lai, et al.
Published: (2024)
Microbial BioRemediation Database: A Comprehensive Database of Genes Involved in Microbial Bioremediation Processes
by: Silvia Petraro, et al.
Published: (2026)
by: Silvia Petraro, et al.
Published: (2026)
LLM Agents for Knowledge Discovery in Atomic Layer Processing
by: Werbrouck, Andreas, et al.
Published: (2025)
by: Werbrouck, Andreas, et al.
Published: (2025)
KINDLE: Knowledge-Guided Distillation for Prior-Free Gene Regulatory Network Inference
by: Peng, Rui, et al.
Published: (2025)
by: Peng, Rui, et al.
Published: (2025)
Multi-Agent Off-World Exploration for Sparse Evidence Discovery via Gaussian Belief Mapping and Dual-Domain Coverage
by: Qiao, Zhuoran, et al.
Published: (2026)
by: Qiao, Zhuoran, et al.
Published: (2026)
A Versatile AI Agent for Rare Disease Diagnosis and Risk Gene Prioritization
by: Liu, Tianyu, et al.
Published: (2026)
by: Liu, Tianyu, et al.
Published: (2026)
GenoTEX: An LLM Agent Benchmark for Automated Gene Expression Data Analysis
by: Liu, Haoyang, et al.
Published: (2024)
by: Liu, Haoyang, et al.
Published: (2024)
From Single to Multi-Agent Reasoning: Advancing GeneGPT for Genomics QA
by: Abedini, Kimia, et al.
Published: (2026)
by: Abedini, Kimia, et al.
Published: (2026)
Gene Set Summarization using Large Language Models
by: Joachimiak, Marcin P., et al.
Published: (2023)
by: Joachimiak, Marcin P., et al.
Published: (2023)
COKE: Causal Discovery with Chronological Order and Expert Knowledge in High Proportion of Missing Manufacturing Data
by: Ou, Ting-Yun, et al.
Published: (2024)
by: Ou, Ting-Yun, et al.
Published: (2024)
PriM: Principle-Inspired Material Discovery through Multi-Agent Collaboration
by: Lai, Zheyuan, et al.
Published: (2025)
by: Lai, Zheyuan, et al.
Published: (2025)
Entry-level guide to the use of large language models for medical research
by: Jin, Qiao, et al.
Published: (2024)
by: Jin, Qiao, et al.
Published: (2024)
Urinary catheter placement and adverse urinary outcomes with a focus on elevated risk in men with indwelling Foley catheters
by: Kai‐Ting Chang, et al.
Published: (2024)
by: Kai‐Ting Chang, et al.
Published: (2024)
Multi-omic Causal Discovery using Genotypes and Gene Expression
by: Asiedu, Stephen, et al.
Published: (2025)
by: Asiedu, Stephen, et al.
Published: (2025)
Similar Items
-
Knowledge-guided Contextual Gene Set Analysis Using Large Language Models
by: Wang, Zhizheng, et al.
Published: (2025) -
Gene-R1: Reasoning with Data-Augmented Lightweight LLMs for Gene Set Analysis
by: Wang, Zhizheng, et al.
Published: (2025) -
PubTator 3.0: an AI-powered Literature Resource for Unlocking Biomedical Knowledge
by: Wei, Chih-Hsuan, et al.
Published: (2024) -
Enhancing Biomedical Relation Extraction with Directionality
by: Lai, Po-Ting, et al.
Published: (2025) -
MedHopQA: A Disease-Centered Multi-Hop Reasoning Benchmark and Evaluation Framework for LLM-Based Biomedical Question Answering
by: Islamaj, Rezarta, et al.
Published: (2026)