Exploration of methods for computing sensitivities in ODE models at dynamic and steady states
Fuente:
arXiv
Saved in:
| Main Authors: | Lakrisenko, Polina, Pathirana, Dilan, Weindl, Daniel, Hasenauer, Jan |
|---|---|
| Format: | Preprint |
| Published: |
2024
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Scalable branch-and-bound model selection with non-monotonic criteria including AIC, BIC and Mallows's $\mathit{C_p}$
by: Vanhoefer, Jakob, et al.
Published: (2025)
by: Vanhoefer, Jakob, et al.
Published: (2025)
Non-Negative Universal Differential Equations With Applications in Systems Biology
by: Philipps, Maren, et al.
Published: (2024)
by: Philipps, Maren, et al.
Published: (2024)
PEtab-GUI: A graphical user interface to create, edit and inspect PEtab parameter estimation problems
by: Jost, Paul Jonas, et al.
Published: (2025)
by: Jost, Paul Jonas, et al.
Published: (2025)
Compositional amortized inference for large-scale hierarchical Bayesian models
by: Arruda, Jonas, et al.
Published: (2025)
by: Arruda, Jonas, et al.
Published: (2025)
Assessment of Simulation-based Inference Methods for Stochastic Compartmental Models in Epidemiological Research
by: Wieland, Vincent, et al.
Published: (2025)
by: Wieland, Vincent, et al.
Published: (2025)
Assessment of Uncertainty Quantification in Universal Differential Equations
by: Schmid, Nina, et al.
Published: (2024)
by: Schmid, Nina, et al.
Published: (2024)
LASSO-ODE: A framework for mechanistic model identifiability and selection in disease transmission modeling
by: Tan, Jiale, et al.
Published: (2025)
by: Tan, Jiale, et al.
Published: (2025)
Protein-environment-sensitive computational epitope accessibility analysis from antibody dose-response data
by: Tschimmel, Dominik, et al.
Published: (2024)
by: Tschimmel, Dominik, et al.
Published: (2024)
A new computational model for quantifying blood flow dynamics across myogenically-active cerebral arterial networks
by: Coccarelli, Alberto, et al.
Published: (2024)
by: Coccarelli, Alberto, et al.
Published: (2024)
Identifiable specializations for ODE models
by: Ovchinnikov, Alexey, et al.
Published: (2023)
by: Ovchinnikov, Alexey, et al.
Published: (2023)
New tools for comparing classical and neural ODE models for tumor growth
by: Blaom, Anthony D., et al.
Published: (2025)
by: Blaom, Anthony D., et al.
Published: (2025)
Beyond Boolean networks: new tools for the steady state analysis of multivalued networks
by: Galofre, J. García, et al.
Published: (2024)
by: Galofre, J. García, et al.
Published: (2024)
Parameter inference in a computational model of hemodynamics in pulmonary hypertension
by: Colunga, Amanda L., et al.
Published: (2021)
by: Colunga, Amanda L., et al.
Published: (2021)
Deep vectorised operators for pulsatile hemodynamics estimation in coronary arteries from a steady-state prior
by: Suk, Julian, et al.
Published: (2024)
by: Suk, Julian, et al.
Published: (2024)
A generalisation of the method of regression calibration and comparison with Bayesian and frequentist model averaging methods
by: Little, Mark P, et al.
Published: (2023)
by: Little, Mark P, et al.
Published: (2023)
Data-driven discovery of dynamical models in biology
by: Prokop, Bartosz, et al.
Published: (2025)
by: Prokop, Bartosz, et al.
Published: (2025)
Parameter selection and optimization of a computational network model of blood flow in single-ventricle patients
by: Taylor-LaPole, Alyssa M., et al.
Published: (2024)
by: Taylor-LaPole, Alyssa M., et al.
Published: (2024)
Opportunities in deep learning methods development for computational biology
by: Lee, Alex Jihun, et al.
Published: (2024)
by: Lee, Alex Jihun, et al.
Published: (2024)
Cooperative SIR dynamics as a model for spontaneous blood clot initiation
by: Greulich, Philip
Published: (2024)
by: Greulich, Philip
Published: (2024)
An Entropy-initiated Coupled-Trait ODE Framework for Modeling Longitudinal Cohort Dynamics
by: Rodriguez, Anderson M.
Published: (2025)
by: Rodriguez, Anderson M.
Published: (2025)
Categorization of 33 computational methods to detect spatially variable genes from spatially resolved transcriptomics data
by: Yan, Guanao, et al.
Published: (2024)
by: Yan, Guanao, et al.
Published: (2024)
Structured methods for parameter inference and uncertainty quantification for mechanistic models in the life sciences
by: Plank, Michael J., et al.
Published: (2024)
by: Plank, Michael J., et al.
Published: (2024)
Comparative analysis of whole-body center-of-mass estimation methods in dynamic and static activities using marker-based systems
by: Peng, Jingshu, et al.
Published: (2024)
by: Peng, Jingshu, et al.
Published: (2024)
Ten computational challenges in human virome studies
by: Wu, Yifan, et al.
Published: (2024)
by: Wu, Yifan, et al.
Published: (2024)
Widespread quasi-steady state assumption in biological interaction modeling mischaracterizes system transitions
by: Kim, Pan-Jun
Published: (2026)
by: Kim, Pan-Jun
Published: (2026)
A discontinuous Galerkin method for the three-dimensional heterodimer model with application to prion-like proteins' dynamics
by: Antonietti, Paola F., et al.
Published: (2024)
by: Antonietti, Paola F., et al.
Published: (2024)
Neural networks for learning macroscopic chemotactic sensitivity from microscopic models
by: Erban, Radek
Published: (2025)
by: Erban, Radek
Published: (2025)
Quantitative assessment of biological dynamics with aggregate data
by: McCoy, Stephen, et al.
Published: (2025)
by: McCoy, Stephen, et al.
Published: (2025)
Uncertainty and sensitivity analysis of hair growth duration in human scalp follicles under normal and alopecic conditions
by: Dobreva, Atanaska, et al.
Published: (2025)
by: Dobreva, Atanaska, et al.
Published: (2025)
Integrating experimental feedback improves generative models for biological sequences
by: Calvanese, Francesco, et al.
Published: (2025)
by: Calvanese, Francesco, et al.
Published: (2025)
Heterogeneous immune recovery after viral response through a dynamical model of feedback-driven persistence and clearance
by: Wang, Xiaoxin, et al.
Published: (2025)
by: Wang, Xiaoxin, et al.
Published: (2025)
How high-resolution agent-based models can improve fundamental insights in tissue development and cell culturing methods
by: Van Liedekerke, Paul, et al.
Published: (2026)
by: Van Liedekerke, Paul, et al.
Published: (2026)
bia-binder: A web-native cloud compute service for the bioimage analysis community
by: Russell, Craig T., et al.
Published: (2024)
by: Russell, Craig T., et al.
Published: (2024)
A computational framework for optimal and Model Predictive Control of stochastic gene regulatory networks
by: Faquir, Hamza, et al.
Published: (2024)
by: Faquir, Hamza, et al.
Published: (2024)
From local defects to shear-organized biofilms in tonsillar crypts via computational simulations
by: Tozzi, Arturo
Published: (2026)
by: Tozzi, Arturo
Published: (2026)
A computational pipeline for clustering left atrial appendage morphology via elastic shape analysis
by: Ahmad, Zan, et al.
Published: (2024)
by: Ahmad, Zan, et al.
Published: (2024)
Novel software for continuous wavelet analysis enable EEG real-time analysis on portable computers
by: Nakanishi, Shoichiro
Published: (2025)
by: Nakanishi, Shoichiro
Published: (2025)
Hybrid methods in reaction-diffusion equations
by: Alarcón, Tomás, et al.
Published: (2024)
by: Alarcón, Tomás, et al.
Published: (2024)
ORMIR_XCT: A Python package for high resolution peripheral quantitative computed tomography image processing
by: Kuczynski, Michael T., et al.
Published: (2023)
by: Kuczynski, Michael T., et al.
Published: (2023)
How to disentangle psychobiological stress reactivity and recovery: A comparison of model-based and non-compartmental analyses of cortisol concentrations
by: Miller, Robert, et al.
Published: (2017)
by: Miller, Robert, et al.
Published: (2017)
Similar Items
-
Scalable branch-and-bound model selection with non-monotonic criteria including AIC, BIC and Mallows's $\mathit{C_p}$
by: Vanhoefer, Jakob, et al.
Published: (2025) -
Non-Negative Universal Differential Equations With Applications in Systems Biology
by: Philipps, Maren, et al.
Published: (2024) -
PEtab-GUI: A graphical user interface to create, edit and inspect PEtab parameter estimation problems
by: Jost, Paul Jonas, et al.
Published: (2025) -
Compositional amortized inference for large-scale hierarchical Bayesian models
by: Arruda, Jonas, et al.
Published: (2025) -
Assessment of Simulation-based Inference Methods for Stochastic Compartmental Models in Epidemiological Research
by: Wieland, Vincent, et al.
Published: (2025)