Mathematical models of the Arabidopsis circadian oscillator
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arXiv
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| Hauptverfasser: | , , |
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| Format: | Preprint |
| Veröffentlicht: |
2024
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| _version_ | 1866909212132507648 |
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| author | Henao, Lucas Ares, Saúl Catalán, Pablo |
| author_facet | Henao, Lucas Ares, Saúl Catalán, Pablo |
| contents | We review the construction and evolution of mathematical models of the Arabidopsis circadian clock, structuring the discussion into two distinct historical phases of modeling strategies: extension and reduction. The extension phase explores the bottom-up assembly of regulatory networks introducing as many components and interactions as possible in order to capture the oscillatory nature of the clock. The reduction phase deals with functional decomposition, distilling complex models to their essential dynamical repertoire. Current challenges in this field, including the integration of spatial considerations and environmental influences like light and temperature, are also discussed. The review emphasizes the ongoing need for models that balance molecular detail with practical simplicity. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2405_18006 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Mathematical models of the Arabidopsis circadian oscillator Henao, Lucas Ares, Saúl Catalán, Pablo Biological Physics Pattern Formation and Solitons Molecular Networks We review the construction and evolution of mathematical models of the Arabidopsis circadian clock, structuring the discussion into two distinct historical phases of modeling strategies: extension and reduction. The extension phase explores the bottom-up assembly of regulatory networks introducing as many components and interactions as possible in order to capture the oscillatory nature of the clock. The reduction phase deals with functional decomposition, distilling complex models to their essential dynamical repertoire. Current challenges in this field, including the integration of spatial considerations and environmental influences like light and temperature, are also discussed. The review emphasizes the ongoing need for models that balance molecular detail with practical simplicity. |
| title | Mathematical models of the Arabidopsis circadian oscillator |
| topic | Biological Physics Pattern Formation and Solitons Molecular Networks |
| url | https://arxiv.org/abs/2405.18006 |