The surface tension of Martini 3 water mixtures
Fuente:
arXiv
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| Autori principali: | , , , , , , |
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| Natura: | Preprint |
| Pubblicazione: |
2024
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| _version_ | 1866929620306100224 |
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| author | Iannetti, Lorenzo Cambiaso, Sonia Rasera, Fabio Giacomello, Alberto Rossi, Giulia Bochicchio, Davide Tinti, Antonio |
| author_facet | Iannetti, Lorenzo Cambiaso, Sonia Rasera, Fabio Giacomello, Alberto Rossi, Giulia Bochicchio, Davide Tinti, Antonio |
| contents | The Martini model, a coarse-grained forcefield for biomolecular simulations, has experienced a vast increase in popularity in the past decade. Its building-block approach balances computational efficiency with high chemical specificity, enabling the simulation of various organic and inorganic molecules. The modeling of coarse-grained beads as Lennard-Jones particles poses challenges for the accurate reproduction of liquid-vapour interfacial properties, which are crucial in various applications, especially in the case of water. The latest version of the forcefield introduces refined interaction parameters for water beads, tackling the well-known artefact of Martini water freezing at room temperature. Additionally, multiple sizes of water beads are available for simulating the solvation of small cavities, including the smallest pockets of proteins. This work focuses on studying the interfacial properties of Martini water, including surface tension, surface thickness, and bulk densities for the liquid and vapour phases. Employing the test-area method, we systematically compute the liquid-vapour surface tension across various combinations of water bead sizes and for temperatures in the range from 300 to 350 K. Our findings provide a comprehensive characterization of Martini 3.0 water intefacial properties. These findings are of interest to the Martini community as they allow users to account for the low interfacial tension of Martini water by properly adjusting observables computed via coarse-grained simulations (e.g., capillary forces) to allow for accurate matching against all-atom or experimental results. Surface tension data are also interpreted in terms of local enrichment of the various mixture components at the liquid-vapour interface by means of Gibbs' adsorption formalism |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2405_18970 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | The surface tension of Martini 3 water mixtures Iannetti, Lorenzo Cambiaso, Sonia Rasera, Fabio Giacomello, Alberto Rossi, Giulia Bochicchio, Davide Tinti, Antonio Soft Condensed Matter The Martini model, a coarse-grained forcefield for biomolecular simulations, has experienced a vast increase in popularity in the past decade. Its building-block approach balances computational efficiency with high chemical specificity, enabling the simulation of various organic and inorganic molecules. The modeling of coarse-grained beads as Lennard-Jones particles poses challenges for the accurate reproduction of liquid-vapour interfacial properties, which are crucial in various applications, especially in the case of water. The latest version of the forcefield introduces refined interaction parameters for water beads, tackling the well-known artefact of Martini water freezing at room temperature. Additionally, multiple sizes of water beads are available for simulating the solvation of small cavities, including the smallest pockets of proteins. This work focuses on studying the interfacial properties of Martini water, including surface tension, surface thickness, and bulk densities for the liquid and vapour phases. Employing the test-area method, we systematically compute the liquid-vapour surface tension across various combinations of water bead sizes and for temperatures in the range from 300 to 350 K. Our findings provide a comprehensive characterization of Martini 3.0 water intefacial properties. These findings are of interest to the Martini community as they allow users to account for the low interfacial tension of Martini water by properly adjusting observables computed via coarse-grained simulations (e.g., capillary forces) to allow for accurate matching against all-atom or experimental results. Surface tension data are also interpreted in terms of local enrichment of the various mixture components at the liquid-vapour interface by means of Gibbs' adsorption formalism |
| title | The surface tension of Martini 3 water mixtures |
| topic | Soft Condensed Matter |
| url | https://arxiv.org/abs/2405.18970 |