BEACON: Benchmark for Comprehensive RNA Tasks and Language Models
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arXiv
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| Main Authors: | Ren, Yuchen, Chen, Zhiyuan, Qiao, Lifeng, Jing, Hongtai, Cai, Yuchen, Xu, Sheng, Ye, Peng, Ma, Xinzhu, Sun, Siqi, Yan, Hongliang, Yuan, Dong, Ouyang, Wanli, Liu, Xihui |
|---|---|
| Format: | Preprint |
| Published: |
2024
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| Subjects: | |
| Online Access: | |
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