Saved in:
| Main Authors: | Dip, Sajib Acharjee, Shuvo, Uddip Acharjee, Chau, Tran, Song, Haoqiu, Choi, Petra, Wang, Xuan, Zhang, Liqing |
|---|---|
| Format: | Preprint |
| Published: |
2024
|
| Subjects: | |
| Online Access: | https://arxiv.org/abs/2406.13133 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
CFM-GP: Unified Conditional Flow Matching to Learn Gene Perturbation Across Cell Types
by: Abir, Abrar Rahman, et al.
Published: (2025)
by: Abir, Abrar Rahman, et al.
Published: (2025)
LLM4Cell: A Survey of Large Language and Agentic Models for Single-Cell Biology
by: Dip, Sajib Acharjee, et al.
Published: (2025)
by: Dip, Sajib Acharjee, et al.
Published: (2025)
MoXGATE: Modality-aware cross-attention for multi-omic gastrointestinal cancer sub-type classification
by: Dip, Sajib Acharjee, et al.
Published: (2025)
by: Dip, Sajib Acharjee, et al.
Published: (2025)
PlantMarkerBench: A Multi-Species Benchmark for Evidence-Grounded Plant Marker Reasoning
by: Dip, Sajib Acharjee, et al.
Published: (2026)
by: Dip, Sajib Acharjee, et al.
Published: (2026)
Equitable Skin Disease Prediction Using Transfer Learning and Domain Adaptation
by: Dip, Sajib Acharjee, et al.
Published: (2024)
by: Dip, Sajib Acharjee, et al.
Published: (2024)
GENERator: A Long-Context Generative Genomic Foundation Model
by: Wu, Wei, et al.
Published: (2025)
by: Wu, Wei, et al.
Published: (2025)
OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking
by: Yang, Heng, et al.
Published: (2025)
by: Yang, Heng, et al.
Published: (2025)
OmniGenBench: Automating Large-scale in-silico Benchmarking for Genomic Foundation Models
by: Yang, Heng, et al.
Published: (2024)
by: Yang, Heng, et al.
Published: (2024)
Entropy, Disagreement, and the Limits of Foundation Models in Genomics
by: Rochkoulets, Maxime, et al.
Published: (2026)
by: Rochkoulets, Maxime, et al.
Published: (2026)
Poisoning the Genome: Targeted Backdoor Attacks on DNA Foundation Models
by: Koilakos, Charalampos, et al.
Published: (2026)
by: Koilakos, Charalampos, et al.
Published: (2026)
GenomeQA: Benchmarking General Large Language Models for Genome Sequence Understanding
by: Long, Weicai, et al.
Published: (2026)
by: Long, Weicai, et al.
Published: (2026)
AntigenLM: Structure-Aware DNA Language Modeling for Influenza
by: Pei, Yue, et al.
Published: (2026)
by: Pei, Yue, et al.
Published: (2026)
JEPA-DNA: Grounding Genomic Foundation Models through Joint-Embedding Predictive Architectures
by: Larey, Ariel, et al.
Published: (2026)
by: Larey, Ariel, et al.
Published: (2026)
PhageBench: Can LLMs Understand Raw Bacteriophage Genomes?
by: Hou, Yusen, et al.
Published: (2026)
by: Hou, Yusen, et al.
Published: (2026)
Gene42: Long-Range Genomic Foundation Model With Dense Attention
by: Vishniakov, Kirill, et al.
Published: (2025)
by: Vishniakov, Kirill, et al.
Published: (2025)
DNACHUNKER: Learnable Tokenization for DNA Language Models
by: Kim, Taewon, et al.
Published: (2026)
by: Kim, Taewon, et al.
Published: (2026)
Bridging Sequence-Structure Alignment in RNA Foundation Models
by: Yang, Heng, et al.
Published: (2024)
by: Yang, Heng, et al.
Published: (2024)
SPACE: Your Genomic Profile Predictor is a Powerful DNA Foundation Model
by: Yang, Zhao, et al.
Published: (2025)
by: Yang, Zhao, et al.
Published: (2025)
AI for Biomedicine in the Era of Large Language Models
by: Bi, Zhenyu, et al.
Published: (2024)
by: Bi, Zhenyu, et al.
Published: (2024)
GeneMamba: An Efficient and Effective Foundation Model on Single Cell Data
by: Qi, Cong, et al.
Published: (2025)
by: Qi, Cong, et al.
Published: (2025)
DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome
by: Zhou, Zhihan, et al.
Published: (2023)
by: Zhou, Zhihan, et al.
Published: (2023)
Finding low-complexity DNA sequences with longdust
by: Li, Heng, et al.
Published: (2025)
by: Li, Heng, et al.
Published: (2025)
Genome-Factory: A Library for Tuning, Deploying, and Interpreting Genomic Foundation Models
by: Wu, Weimin, et al.
Published: (2025)
by: Wu, Weimin, et al.
Published: (2025)
Genome sequence of a marine threespine stickleback (Gasterosteus aculeatus) from Rabbit Slough in the Cook Inlet.
by: Au, Eric H, et al.
Published: (2025)
by: Au, Eric H, et al.
Published: (2025)
D3LM: A Discrete DNA Diffusion Language Model for Bidirectional DNA Understanding and Generation
by: Yang, Zhao, et al.
Published: (2026)
by: Yang, Zhao, et al.
Published: (2026)
Genome sequence of the Mediterranean red coral Corallium rubrum.
by: Ganot, Philippe, et al.
Published: (2024)
by: Ganot, Philippe, et al.
Published: (2024)
PAINT: Paying Attention to INformed Tokens to Mitigate Hallucination in Large Vision-Language Model
by: Arif, Kazi Hasan Ibn, et al.
Published: (2025)
by: Arif, Kazi Hasan Ibn, et al.
Published: (2025)
JanusDNA: A Powerful Bi-directional Hybrid DNA Foundation Model
by: Duan, Qihao, et al.
Published: (2025)
by: Duan, Qihao, et al.
Published: (2025)
How Private Are DNA Embeddings? Inverting Foundation Model Representations of Genomic Sequences
by: Ouaari, Sofiane, et al.
Published: (2026)
by: Ouaari, Sofiane, et al.
Published: (2026)
Range-Limited Heaps' Law for Functional DNA Words in the Human Genome
by: Li, Wentian, et al.
Published: (2024)
by: Li, Wentian, et al.
Published: (2024)
Cross-Species Antimicrobial Resistance Prediction from Genomic Foundation Models
by: Tai, Huilin
Published: (2026)
by: Tai, Huilin
Published: (2026)
Leveraging Natural Language Processing to Unravel the Mystery of Life: A Review of NLP Approaches in Genomics, Transcriptomics, and Proteomics
by: Rannon, Ella, et al.
Published: (2025)
by: Rannon, Ella, et al.
Published: (2025)
A Zipf-preserving, long-range correlated surrogate for written language and other symbolic sequences
by: Montemurro, Marcelo A., et al.
Published: (2026)
by: Montemurro, Marcelo A., et al.
Published: (2026)
Omni-DNA: A Unified Genomic Foundation Model for Cross-Modal and Multi-Task Learning
by: Li, Zehui, et al.
Published: (2025)
by: Li, Zehui, et al.
Published: (2025)
Regulatory DNA sequence Design with Reinforcement Learning
by: Yang, Zhao, et al.
Published: (2025)
by: Yang, Zhao, et al.
Published: (2025)
A Chromosome-level Assembly and Functional Genomic Resources for the Model Annelid Capitella teleta.
by: Davies, Billie E, et al.
Published: (2026)
by: Davies, Billie E, et al.
Published: (2026)
Can linguists better understand DNA?
by: Liang, Wang
Published: (2024)
by: Liang, Wang
Published: (2024)
MergeDNA: Context-aware Genome Modeling with Dynamic Tokenization through Token Merging
by: Li, Siyuan, et al.
Published: (2025)
by: Li, Siyuan, et al.
Published: (2025)
Use of 3D chaos game representation to quantify DNA sequence similarity with applications for hierarchical clustering
by: Young, Stephanie, et al.
Published: (2024)
by: Young, Stephanie, et al.
Published: (2024)
GenomeIndia: Whole genome sequencing variant calling code
by: Kahali, Bratati, et al.
Published: (2026)
by: Kahali, Bratati, et al.
Published: (2026)
Similar Items
-
CFM-GP: Unified Conditional Flow Matching to Learn Gene Perturbation Across Cell Types
by: Abir, Abrar Rahman, et al.
Published: (2025) -
LLM4Cell: A Survey of Large Language and Agentic Models for Single-Cell Biology
by: Dip, Sajib Acharjee, et al.
Published: (2025) -
MoXGATE: Modality-aware cross-attention for multi-omic gastrointestinal cancer sub-type classification
by: Dip, Sajib Acharjee, et al.
Published: (2025) -
PlantMarkerBench: A Multi-Species Benchmark for Evidence-Grounded Plant Marker Reasoning
by: Dip, Sajib Acharjee, et al.
Published: (2026) -
Equitable Skin Disease Prediction Using Transfer Learning and Domain Adaptation
by: Dip, Sajib Acharjee, et al.
Published: (2024)