Cover Image

scTree: Discovering Cellular Hierarchies in the Presence of Batch Effects in scRNA-seq Data

Fuente: arXiv

Saved in:

Bibliographic Details
Main Authors:	Vandenhirtz, Moritz, Barkmann, Florian, Manduchi, Laura, Vogt, Julia E., Boeva, Valentina
Format:	Preprint
Published:	2024
Subjects:	Machine Learning
Online Access:	Acceder al recurso
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data
by: Ovcharenko, Olga, et al.
Published: (2025)

ltirloni/Ixsc-scRNA-seq: Ixsc-scRNA-seq
by: Lucas Tirloni
Published: (2026)

Donor-Aware scRNA-seq Benchmarks for IBD Classification
by: Muhire, Jonathan
Published: (2026)

scRNA-seq and bulk RNA-seq of PBMC
by: Ludwig-Maximilians-Universität München
Published: (2025)

scDD: Latent Codes Based scRNA-seq Dataset Distillation with Foundation Model Knowledge
by: Yu, Zhen, et al.
Published: (2025)

Hypergraph Representations of scRNA-seq Data for Improved Clustering with Random Walks
by: He, Wan, et al.
Published: (2025)

Integrating Dynamical Systems Modeling with Spatiotemporal scRNA-seq Data Analysis
by: Zhang, Zhenyi, et al.
Published: (2025)

A Hybrid Computational Intelligence Framework for scRNA-seq Imputation: Integrating scRecover and Random Forests
by: Anaissi, Ali, et al.
Published: (2025)

scRNA-seq Analysis of Microbiome BBB Effects
by: Zemmel, Zachary
Published: (2025)

Modeling Temporal scRNA-seq Data with Latent Gaussian Process and Optimal Transport
by: Balik, Mehmet Yigit, et al.
Published: (2026)

Bipartite Graph Attention-based Clustering for Large-scale scRNA-seq Data
by: Liang, Zhuomin, et al.
Published: (2026)

scReader: Prompting Large Language Models to Interpret scRNA-seq Data
by: Li, Cong, et al.
Published: (2024)

scX: A user-friendly tool for scRNA-seq exploration
by: Waichman, Tomás Vega, et al.
Published: (2023)

scRNA-seq clustering datasets for PFDL-SC
by: Sun, Guicong
Published: (2026)

KentaNitahara/Chd8_scRNA-seq: Chd8_scRNAseq
by: akwamura
Published: (2026)

SpaDiT: Diffusion Transformer for Spatial Gene Expression Prediction using scRNA-seq
by: Li, Xiaoyu, et al.
Published: (2024)

scRNA-seq Analysis Pipeline for Dictyostelium Developmental Synchronicity
by: Lena Trnovec
Published: (2026)

scInterpreter: Training Large Language Models to Interpret scRNA-seq Data for Cell Type Annotation
by: Li, Cong, et al.
Published: (2024)

Global Ground Metric Learning with Applications to scRNA data
by: Kühn, Damin, et al.
Published: (2025)

Diversity by Design: Addressing Mode Collapse Improves scRNA-seq Perturbation Modeling on Well-Calibrated Metrics
by: Mejia, Gabriel M., et al.
Published: (2025)

taoge98/scRNA-seq-code: First public release
by: MiaoXuemei
Published: (2025)

Mix-Geneformer: Unified Representation Learning for Human and Mouse scRNA-seq Data
by: Nishio, Yuki, et al.
Published: (2025)

LapDDPM: A Conditional Graph Diffusion Model for scRNA-seq Generation with Spectral Adversarial Perturbations
by: Bini, Lorenzo, et al.
Published: (2025)

Pan-cancer gene set discovery via scRNA-seq for optimal deep learning based downstream tasks
by: Kim, Jong Hyun, et al.
Published: (2024)

Graph Structure Learning for Tumor Microenvironment with Cell Type Annotation from non-spatial scRNA-seq data
by: Huang, Yu-An, et al.
Published: (2025)

Structured Generations: Using Hierarchical Clusters to guide Diffusion Models
by: Goncalves, Jorge da Silva, et al.
Published: (2024)

Simultaneously Infer Cell Pseudotime,Velocity Field and Gene Interaction from Multi-Branch scRNA-seq Data with scPN
by: Zhou, Zhen, et al.
Published: (2024)

Reproducible scRNA-seq PBMC Workflow: Reference, Toy Demonstration Data, and Analysis Outputs
by: Inkala, Simo
Published: (2024)

SemiLT: A Multianchor Transfer Learning Method for Cross‐Modality Cell Label Annotation from scRNA‐seq to scATAC‐seq
by: Zhitong Chen, et al.
Published: (2025)

iSCORE-PD: scRNA-seq of irradiated WIBR3 cortical spheroids
by: Busquets, Oriol, et al.
Published: (2026)

scRNA-seq atlases for 3 Caenorhabditis species - scripts for analysis and figures in paper
by: Toker, Itai Antoine
Published: (2025)

scRNA-seq atlases for 3 Caenorhabditis species - code for analysis and figures in manuscript
by: Toker, Itai Antoine
Published: (2024)

scRNA‐seq determines the characteristics of T cell marker genes to predict the prognosis of esophageal cancer
by: Fang Meng, et al.
Published: (2024)

To Explore the Key Subgroup and Their Immune Microenvironment During the Formation of Coronary Plaque With scRNA‐seq
by: Xinhan Li, et al.
Published: (2025)

Partial domain adaptation enables cross domain cell type annotation between scRNA-seq and snRNA-seq
by: Chen, Xiran, et al.
Published: (2025)

Integrative analysis of bulk RNA‐seq and scRNA‐seq data indicates the prognostic and immunologic values of SERPINH1 in glioma
by: Shiqiang Hou, et al.
Published: (2024)

From Pixels to Perception: Interpretable Predictions via Instance-wise Grouped Feature Selection
by: Vandenhirtz, Moritz, et al.
Published: (2025)

Processed scRNA-seq and Visium spatial transcriptomics of mouse choroid plexus in stroke and sham conditions
by: Zhu, Haoyang
Published: (2026)

Major cell types in the coronary thrombosis of acute myocardial infarction patients revealed by scRNA‐seq
by: Zhiyao Wei, et al.
Published: (2025)

TreeDiffusion: Hierarchical Generative Clustering for Conditional Diffusion
by: Gonçalves, Jorge da Silva, et al.
Published: (2024)