Bridging-Induced Phase Separation and Loop Extrusion Drive Noise in Chromatin Transcription
Fuente:
arXiv
Saved in:
| Main Authors: | Chiang, Michael, Battaglia, Cleis, Forte, Giada, Brackley, Chris A., Gilbert, Nick, Marenduzzo, Davide |
|---|---|
| Format: | Preprint |
| Published: |
2024
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Nucleoid clustering drives stepwise expansion and segregation of replicating bacterial chromosomes
by: Forte, Giada, et al.
Published: (2026)
by: Forte, Giada, et al.
Published: (2026)
Transcription-driven DNA Supercoiling: Non-Equilibrium Dynamics and Action-at-a-distance
by: Fosado, Y. A. G., et al.
Published: (2019)
by: Fosado, Y. A. G., et al.
Published: (2019)
Modelling transcriptional silencing and its coupling to 3D genome organisation
by: Semeraro, Massimiliano, et al.
Published: (2025)
by: Semeraro, Massimiliano, et al.
Published: (2025)
Cluster size determines internal structure of transcription factories in human cells
by: Semeraro, Massimiliano, et al.
Published: (2023)
by: Semeraro, Massimiliano, et al.
Published: (2023)
Intercellular Friction and Motility Drive Orientational Order in Cell Monolayers
by: Chiang, Michael, et al.
Published: (2023)
by: Chiang, Michael, et al.
Published: (2023)
A Single Nucleotide Resolution Model for Large-Scale Simulations of Double Stranded DNA
by: Fosado, Y. A. G., et al.
Published: (2016)
by: Fosado, Y. A. G., et al.
Published: (2016)
Multiphase Field Model of Cells on a Substrate: From 3D to 2D
by: Chiang, Michael, et al.
Published: (2024)
by: Chiang, Michael, et al.
Published: (2024)
Motility induced phase separation of deformable cells
by: Hopkins, Austin, et al.
Published: (2023)
by: Hopkins, Austin, et al.
Published: (2023)
Binding Kinetics Oppositely Regulates type II Topoisomerase Relaxation and Decatenation Activities
by: Battaglia, Cleis, et al.
Published: (2025)
by: Battaglia, Cleis, et al.
Published: (2025)
Differential Crosslinking and Contractile Motors Drive Nuclear Chromatin Compaction
by: Theeyancheri, Ligesh, et al.
Published: (2025)
by: Theeyancheri, Ligesh, et al.
Published: (2025)
Active Loop Extrusion guides DNA-Protein Condensation
by: Takaki, Ryota, et al.
Published: (2024)
by: Takaki, Ryota, et al.
Published: (2024)
Universal Loop Statistics from Active Extrusion with Kinetic Barriers
by: Chervinskaya, A., et al.
Published: (2026)
by: Chervinskaya, A., et al.
Published: (2026)
Loop Extrusion Reversal by Condensin Motor is Mediated by Catch Bonds
by: Dey, Atreya, et al.
Published: (2026)
by: Dey, Atreya, et al.
Published: (2026)
Topological weight and structural diversity of polydisperse chromatin loop networks
by: Bonato, Andrea, et al.
Published: (2025)
by: Bonato, Andrea, et al.
Published: (2025)
A unified-field theory of genome organization and gene regulation
by: Negro, Giuseppe, et al.
Published: (2023)
by: Negro, Giuseppe, et al.
Published: (2023)
Local Volume Concentration, Packing Domains and Scaling Properties of Chromatin
by: Carignano, Marcelo, et al.
Published: (2023)
by: Carignano, Marcelo, et al.
Published: (2023)
Oscillation in the SIRS model
by: Marenduzzo, D., et al.
Published: (2025)
by: Marenduzzo, D., et al.
Published: (2025)
Sub-Diffraction Chromatin Domains: Architecture, Regulation, and Functional Roles in Nuclear Organization
by: Vinayak, Vinayak, et al.
Published: (2025)
by: Vinayak, Vinayak, et al.
Published: (2025)
Dynamic Functional Connectivity Resolves Brain Integration-Segregation Trade-off Under Costly Links
by: Mengiste, Simachew Abebe, et al.
Published: (2026)
by: Mengiste, Simachew Abebe, et al.
Published: (2026)
Theory of Reversed Ripening in Active Phase Separating Systems
by: Bauermann, Jonathan, et al.
Published: (2025)
by: Bauermann, Jonathan, et al.
Published: (2025)
Transcription factor clusters as information transfer agents
by: Munshi, Rahul, et al.
Published: (2024)
by: Munshi, Rahul, et al.
Published: (2024)
Intermediate State Formation of Topologically Associated Chromatin Domains using Quantum Annealing
by: Kempe, Tobias, et al.
Published: (2025)
by: Kempe, Tobias, et al.
Published: (2025)
Dual Photonics Probing of Nano- to Submicron-Scale Structural Alterations in Human Brain Tissues or Cells and Chromatin or DNA with the Progression of Alzheimers Disease
by: Alharthi, Fatemah, et al.
Published: (2024)
by: Alharthi, Fatemah, et al.
Published: (2024)
Hyperphosphorylation-Induced Phase Transition in Vesicle Delivery Dynamics of Motor Proteins in Neuronal Cells
by: Lee, Eunsang, et al.
Published: (2024)
by: Lee, Eunsang, et al.
Published: (2024)
Unconventional Phase Separation and Fractal Interfaces of Colloids in Active Liquids
by: Kushwaha, Pragya, et al.
Published: (2025)
by: Kushwaha, Pragya, et al.
Published: (2025)
Chromatin remodeling due to transient-link-and-pass activity enhances subnuclear dynamics
by: Das, Rakesh, et al.
Published: (2023)
by: Das, Rakesh, et al.
Published: (2023)
Tracking Cluster Continuity and Dynamics in Time-Series Data: Application to Chromatin Polymer Simulations
by: Nakanishi, Ryo, et al.
Published: (2025)
by: Nakanishi, Ryo, et al.
Published: (2025)
Phase Separation on Deformable Membranes: interplay of mechanical coupling and dynamic surface geometry
by: Winter, Antonia, et al.
Published: (2024)
by: Winter, Antonia, et al.
Published: (2024)
Hyperoxia Induced Alteration of Chromatin Structure in Human Bone Marrow Derived Primary Mesenchymal Stromal Cells
by: Lauren Monroe, et al.
Published: (2025)
by: Lauren Monroe, et al.
Published: (2025)
Spatially Correlated Noise Induces Transitions from the Diffusive to Ballistic Regime in Fluids
by: Huang, Sijie, et al.
Published: (2025)
by: Huang, Sijie, et al.
Published: (2025)
Polymer-Residue Accessibility Shapes Sequence Dependence of Critical Temperatures for Phase Separation
by: de Souza, J. Pedro, et al.
Published: (2026)
by: de Souza, J. Pedro, et al.
Published: (2026)
Exploring Spatial Segregation Induced by Competition Avoidance as Driving Mechanism for Emergent Coexistence in Microbial Communities
by: Mattei, Mattia, et al.
Published: (2024)
by: Mattei, Mattia, et al.
Published: (2024)
Electromagnetically-Induced Transparency Bridges Disconnected Light-Harvesting Networks
by: Wang, Jun, et al.
Published: (2025)
by: Wang, Jun, et al.
Published: (2025)
Understanding the Salt Effects on the Liquid-Liquid Phase Separation of Proteins
by: Duan, Chao, et al.
Published: (2023)
by: Duan, Chao, et al.
Published: (2023)
Active Liquid-Liquid Phase-Separation in a Confining Environment
by: Lin, Chen, et al.
Published: (2024)
by: Lin, Chen, et al.
Published: (2024)
Noise induced new quasi-period and periods switching
by: Wu, Yuxuan, et al.
Published: (2021)
by: Wu, Yuxuan, et al.
Published: (2021)
Separation of ionic timescales explains dynamics of cellular volume regulation
by: Adar, Ram M.
Published: (2024)
by: Adar, Ram M.
Published: (2024)
Transcription-induced active forces suppress chromatin motion
by: Shin, Sucheol, et al.
Published: (2022)
by: Shin, Sucheol, et al.
Published: (2022)
Interfacial Permeability, Reflectivity and Preferential Internal Mixing of Phase-Separated Condensates
by: Joyot, Oihan, et al.
Published: (2026)
by: Joyot, Oihan, et al.
Published: (2026)
Phase behaviour of semiflexible lattice polymers in poor-solvent solution: mean-field theory and Monte Carlo simulations
by: Marcato, Davide, et al.
Published: (2023)
by: Marcato, Davide, et al.
Published: (2023)
Similar Items
-
Nucleoid clustering drives stepwise expansion and segregation of replicating bacterial chromosomes
by: Forte, Giada, et al.
Published: (2026) -
Transcription-driven DNA Supercoiling: Non-Equilibrium Dynamics and Action-at-a-distance
by: Fosado, Y. A. G., et al.
Published: (2019) -
Modelling transcriptional silencing and its coupling to 3D genome organisation
by: Semeraro, Massimiliano, et al.
Published: (2025) -
Cluster size determines internal structure of transcription factories in human cells
by: Semeraro, Massimiliano, et al.
Published: (2023) -
Intercellular Friction and Motility Drive Orientational Order in Cell Monolayers
by: Chiang, Michael, et al.
Published: (2023)