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| Hauptverfasser: | , , |
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| Format: | Preprint |
| Veröffentlicht: |
2024
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| Online-Zugang: | https://arxiv.org/abs/2407.06638 |
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| _version_ | 1866910519787520000 |
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| author | Bordewich, Magnus Linz, Simone Semple, Charles |
| author_facet | Bordewich, Magnus Linz, Simone Semple, Charles |
| contents | A normal network is uniquely determined by the set of phylogenetic trees that it displays. Given a set $\mathcal{P}$ of rooted binary phylogenetic trees, this paper presents a polynomial-time algorithm that reconstructs the unique binary normal network whose set of displayed binary trees is $\mathcal{P}$, if such a network exists. Additionally, we show that any two rooted phylogenetic trees can be displayed by a normal network and show that this result does not extend to more than two trees. This is in contrast to tree-child networks where it has been previously shown that any collection of rooted phylogenetic trees can be displayed by a tree-child network. Lastly, we introduce a type of cherry-picking sequence that characterises when a collection $\mathcal{P}$ of rooted phylogenetic trees can be displayed by a normal network and, further, characterise the minimum number of reticulations needed over all normal networks that display $\mathcal{P}$. We then exploit these sequences to show that, for all $n\ge 3$, there exist two rooted binary phylogenetic trees on $n$ leaves that can be displayed by a tree-child network with a single reticulation, but cannot be displayed by a normal network with less than $n-2$ reticulations. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2407_06638 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | When is a set of phylogenetic trees displayed by a normal network? Bordewich, Magnus Linz, Simone Semple, Charles Combinatorics A normal network is uniquely determined by the set of phylogenetic trees that it displays. Given a set $\mathcal{P}$ of rooted binary phylogenetic trees, this paper presents a polynomial-time algorithm that reconstructs the unique binary normal network whose set of displayed binary trees is $\mathcal{P}$, if such a network exists. Additionally, we show that any two rooted phylogenetic trees can be displayed by a normal network and show that this result does not extend to more than two trees. This is in contrast to tree-child networks where it has been previously shown that any collection of rooted phylogenetic trees can be displayed by a tree-child network. Lastly, we introduce a type of cherry-picking sequence that characterises when a collection $\mathcal{P}$ of rooted phylogenetic trees can be displayed by a normal network and, further, characterise the minimum number of reticulations needed over all normal networks that display $\mathcal{P}$. We then exploit these sequences to show that, for all $n\ge 3$, there exist two rooted binary phylogenetic trees on $n$ leaves that can be displayed by a tree-child network with a single reticulation, but cannot be displayed by a normal network with less than $n-2$ reticulations. |
| title | When is a set of phylogenetic trees displayed by a normal network? |
| topic | Combinatorics |
| url | https://arxiv.org/abs/2407.06638 |