Improving Molecular Modeling with Geometric GNNs: an Empirical Study
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arXiv
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| Main Authors: | , , , , , , |
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| Format: | Preprint |
| Published: |
2024
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| _version_ | 1866913427050463232 |
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| author | Ramlaoui, Ali Saulus, Théo Terver, Basile Schmidt, Victor Rolnick, David Malliaros, Fragkiskos D. Duval, Alexandre |
| author_facet | Ramlaoui, Ali Saulus, Théo Terver, Basile Schmidt, Victor Rolnick, David Malliaros, Fragkiskos D. Duval, Alexandre |
| contents | Rapid advancements in machine learning (ML) are transforming materials science by significantly speeding up material property calculations. However, the proliferation of ML approaches has made it challenging for scientists to keep up with the most promising techniques. This paper presents an empirical study on Geometric Graph Neural Networks for 3D atomic systems, focusing on the impact of different (1) canonicalization methods, (2) graph creation strategies, and (3) auxiliary tasks, on performance, scalability and symmetry enforcement. Our findings and insights aim to guide researchers in selecting optimal modeling components for molecular modeling tasks. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2407_08313 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Improving Molecular Modeling with Geometric GNNs: an Empirical Study Ramlaoui, Ali Saulus, Théo Terver, Basile Schmidt, Victor Rolnick, David Malliaros, Fragkiskos D. Duval, Alexandre Machine Learning Rapid advancements in machine learning (ML) are transforming materials science by significantly speeding up material property calculations. However, the proliferation of ML approaches has made it challenging for scientists to keep up with the most promising techniques. This paper presents an empirical study on Geometric Graph Neural Networks for 3D atomic systems, focusing on the impact of different (1) canonicalization methods, (2) graph creation strategies, and (3) auxiliary tasks, on performance, scalability and symmetry enforcement. Our findings and insights aim to guide researchers in selecting optimal modeling components for molecular modeling tasks. |
| title | Improving Molecular Modeling with Geometric GNNs: an Empirical Study |
| topic | Machine Learning |
| url | https://arxiv.org/abs/2407.08313 |