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Main Authors: Li, Siqi, Li, Xin, Yu, Kunyu, Miao, Di, Zhu, Mingcheng, Yan, Mengying, Ke, Yuhe, D'Agostino, Danny, Ning, Yilin, Wu, Qiming, Wang, Ziwen, Shang, Yuqing, Liu, Molei, Hong, Chuan, Liu, Nan
Format: Preprint
Published: 2024
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Online Access:https://arxiv.org/abs/2407.11034
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author Li, Siqi
Li, Xin
Yu, Kunyu
Miao, Di
Zhu, Mingcheng
Yan, Mengying
Ke, Yuhe
D'Agostino, Danny
Ning, Yilin
Wu, Qiming
Wang, Ziwen
Shang, Yuqing
Liu, Molei
Hong, Chuan
Liu, Nan
author_facet Li, Siqi
Li, Xin
Yu, Kunyu
Miao, Di
Zhu, Mingcheng
Yan, Mengying
Ke, Yuhe
D'Agostino, Danny
Ning, Yilin
Wu, Qiming
Wang, Ziwen
Shang, Yuqing
Liu, Molei
Hong, Chuan
Liu, Nan
contents Clinical and biomedical research in low-resource settings often faces significant challenges due to the need for high-quality data with sufficient sample sizes to construct effective models. These constraints hinder robust model training and prompt researchers to seek methods for leveraging existing knowledge from related studies to support new research efforts. Transfer learning (TL), a machine learning technique, emerges as a powerful solution by utilizing knowledge from pre-trained models to enhance the performance of new models, offering promise across various healthcare domains. Despite its conceptual origins in the 1990s, the application of TL in medical research has remained limited, especially beyond image analysis. In our review of TL applications in structured clinical and biomedical data, we screened 3,515 papers, with 55 meeting the inclusion criteria. Among these, only 2% (one out of 55) utilized external studies, and 7% (four out of 55) addressed scenarios involving multi-site collaborations with privacy constraints. To achieve actionable TL with structured medical data while addressing regional disparities, inequality, and privacy constraints in healthcare research, we advocate for the careful identification of appropriate source data and models, the selection of suitable TL frameworks, and the validation of TL models with proper baselines.
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id arxiv_https___arxiv_org_abs_2407_11034
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publishDate 2024
record_format arxiv
spellingShingle Bridging Data Gaps in Healthcare: A Scoping Review of Transfer Learning in Biomedical Data Analysis
Li, Siqi
Li, Xin
Yu, Kunyu
Miao, Di
Zhu, Mingcheng
Yan, Mengying
Ke, Yuhe
D'Agostino, Danny
Ning, Yilin
Wu, Qiming
Wang, Ziwen
Shang, Yuqing
Liu, Molei
Hong, Chuan
Liu, Nan
Machine Learning
Clinical and biomedical research in low-resource settings often faces significant challenges due to the need for high-quality data with sufficient sample sizes to construct effective models. These constraints hinder robust model training and prompt researchers to seek methods for leveraging existing knowledge from related studies to support new research efforts. Transfer learning (TL), a machine learning technique, emerges as a powerful solution by utilizing knowledge from pre-trained models to enhance the performance of new models, offering promise across various healthcare domains. Despite its conceptual origins in the 1990s, the application of TL in medical research has remained limited, especially beyond image analysis. In our review of TL applications in structured clinical and biomedical data, we screened 3,515 papers, with 55 meeting the inclusion criteria. Among these, only 2% (one out of 55) utilized external studies, and 7% (four out of 55) addressed scenarios involving multi-site collaborations with privacy constraints. To achieve actionable TL with structured medical data while addressing regional disparities, inequality, and privacy constraints in healthcare research, we advocate for the careful identification of appropriate source data and models, the selection of suitable TL frameworks, and the validation of TL models with proper baselines.
title Bridging Data Gaps in Healthcare: A Scoping Review of Transfer Learning in Biomedical Data Analysis
topic Machine Learning
url https://arxiv.org/abs/2407.11034