An efficient framework based on large foundation model for cervical cytopathology whole slide image screening
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arXiv
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| Autores principales: | , , , , |
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| Formato: | Preprint |
| Publicado: |
2024
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| Materias: | |
| Acceso en línea: | |
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| _version_ | 1866916326156533760 |
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| author | Huang, Jialong Li, Gaojie Kan, Shichao Liu, Jianfeng Liang, Yixiong |
| author_facet | Huang, Jialong Li, Gaojie Kan, Shichao Liu, Jianfeng Liang, Yixiong |
| contents | Current cervical cytopathology whole slide image (WSI) screening primarily relies on detection-based approaches, which are limited in performance due to the expense and time-consuming annotation process. Multiple Instance Learning (MIL), a weakly supervised approach that relies solely on bag-level labels, can effectively alleviate these challenges. Nonetheless, MIL commonly employs frozen pretrained models or self-supervised learning for feature extraction, which suffers from low efficacy or inefficiency. In this paper, we propose an efficient framework for cervical cytopathology WSI classification using only WSI-level labels through unsupervised and weakly supervised learning. Given the sparse and dispersed nature of abnormal cells within cytopathological WSIs, we propose a strategy that leverages the pretrained foundation model to filter the top$k$ high-risk patches. Subsequently, we suggest parameter-efficient fine-tuning (PEFT) of a large foundation model using contrastive learning on the filtered patches to enhance its representation ability for task-specific signals. By training only the added linear adapters, we enhance the learning of patch-level features with substantially reduced time and memory consumption. Experiments conducted on the CSD and FNAC 2019 datasets demonstrate that the proposed method enhances the performance of various MIL methods and achieves state-of-the-art (SOTA) performance. The code and trained models are publicly available at https://github.com/CVIU-CSU/TCT-InfoNCE. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2407_11486 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | An efficient framework based on large foundation model for cervical cytopathology whole slide image screening Huang, Jialong Li, Gaojie Kan, Shichao Liu, Jianfeng Liang, Yixiong Computer Vision and Pattern Recognition Current cervical cytopathology whole slide image (WSI) screening primarily relies on detection-based approaches, which are limited in performance due to the expense and time-consuming annotation process. Multiple Instance Learning (MIL), a weakly supervised approach that relies solely on bag-level labels, can effectively alleviate these challenges. Nonetheless, MIL commonly employs frozen pretrained models or self-supervised learning for feature extraction, which suffers from low efficacy or inefficiency. In this paper, we propose an efficient framework for cervical cytopathology WSI classification using only WSI-level labels through unsupervised and weakly supervised learning. Given the sparse and dispersed nature of abnormal cells within cytopathological WSIs, we propose a strategy that leverages the pretrained foundation model to filter the top$k$ high-risk patches. Subsequently, we suggest parameter-efficient fine-tuning (PEFT) of a large foundation model using contrastive learning on the filtered patches to enhance its representation ability for task-specific signals. By training only the added linear adapters, we enhance the learning of patch-level features with substantially reduced time and memory consumption. Experiments conducted on the CSD and FNAC 2019 datasets demonstrate that the proposed method enhances the performance of various MIL methods and achieves state-of-the-art (SOTA) performance. The code and trained models are publicly available at https://github.com/CVIU-CSU/TCT-InfoNCE. |
| title | An efficient framework based on large foundation model for cervical cytopathology whole slide image screening |
| topic | Computer Vision and Pattern Recognition |
| url | https://arxiv.org/abs/2407.11486 |