DiNO-Diffusion. Scaling Medical Diffusion via Self-Supervised Pre-Training
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arXiv
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| Auteurs principaux: | , , , , , , |
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| Format: | Preprint |
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2024
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| _version_ | 1866910529388281856 |
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| author | Jimenez-Perez, Guillermo Osorio, Pedro Cersovsky, Josef Montalt-Tordera, Javier Hooge, Jens Vogler, Steffen Mohammadi, Sadegh |
| author_facet | Jimenez-Perez, Guillermo Osorio, Pedro Cersovsky, Josef Montalt-Tordera, Javier Hooge, Jens Vogler, Steffen Mohammadi, Sadegh |
| contents | Diffusion models (DMs) have emerged as powerful foundation models for a variety of tasks, with a large focus in synthetic image generation. However, their requirement of large annotated datasets for training limits their applicability in medical imaging, where datasets are typically smaller and sparsely annotated. We introduce DiNO-Diffusion, a self-supervised method for training latent diffusion models (LDMs) that conditions the generation process on image embeddings extracted from DiNO. By eliminating the reliance on annotations, our training leverages over 868k unlabelled images from public chest X-Ray (CXR) datasets. Despite being self-supervised, DiNO-Diffusion shows comprehensive manifold coverage, with FID scores as low as 4.7, and emerging properties when evaluated in downstream tasks. It can be used to generate semantically-diverse synthetic datasets even from small data pools, demonstrating up to 20% AUC increase in classification performance when used for data augmentation. Images were generated with different sampling strategies over the DiNO embedding manifold and using real images as a starting point. Results suggest, DiNO-Diffusion could facilitate the creation of large datasets for flexible training of downstream AI models from limited amount of real data, while also holding potential for privacy preservation. Additionally, DiNO-Diffusion demonstrates zero-shot segmentation performance of up to 84.4% Dice score when evaluating lung lobe segmentation. This evidences good CXR image-anatomy alignment, akin to segmenting using textual descriptors on vanilla DMs. Finally, DiNO-Diffusion can be easily adapted to other medical imaging modalities or state-of-the-art diffusion models, opening the door for large-scale, multi-domain image generation pipelines for medical imaging. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2407_11594 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | DiNO-Diffusion. Scaling Medical Diffusion via Self-Supervised Pre-Training Jimenez-Perez, Guillermo Osorio, Pedro Cersovsky, Josef Montalt-Tordera, Javier Hooge, Jens Vogler, Steffen Mohammadi, Sadegh Computer Vision and Pattern Recognition Artificial Intelligence Machine Learning Diffusion models (DMs) have emerged as powerful foundation models for a variety of tasks, with a large focus in synthetic image generation. However, their requirement of large annotated datasets for training limits their applicability in medical imaging, where datasets are typically smaller and sparsely annotated. We introduce DiNO-Diffusion, a self-supervised method for training latent diffusion models (LDMs) that conditions the generation process on image embeddings extracted from DiNO. By eliminating the reliance on annotations, our training leverages over 868k unlabelled images from public chest X-Ray (CXR) datasets. Despite being self-supervised, DiNO-Diffusion shows comprehensive manifold coverage, with FID scores as low as 4.7, and emerging properties when evaluated in downstream tasks. It can be used to generate semantically-diverse synthetic datasets even from small data pools, demonstrating up to 20% AUC increase in classification performance when used for data augmentation. Images were generated with different sampling strategies over the DiNO embedding manifold and using real images as a starting point. Results suggest, DiNO-Diffusion could facilitate the creation of large datasets for flexible training of downstream AI models from limited amount of real data, while also holding potential for privacy preservation. Additionally, DiNO-Diffusion demonstrates zero-shot segmentation performance of up to 84.4% Dice score when evaluating lung lobe segmentation. This evidences good CXR image-anatomy alignment, akin to segmenting using textual descriptors on vanilla DMs. Finally, DiNO-Diffusion can be easily adapted to other medical imaging modalities or state-of-the-art diffusion models, opening the door for large-scale, multi-domain image generation pipelines for medical imaging. |
| title | DiNO-Diffusion. Scaling Medical Diffusion via Self-Supervised Pre-Training |
| topic | Computer Vision and Pattern Recognition Artificial Intelligence Machine Learning |
| url | https://arxiv.org/abs/2407.11594 |