Image de couverture de livre

PyamilySeq: A Python Tool for Interpretable Gene (Re)Clustering and Pangenomic Inference Across Species and Genera

Fuente: arXiv

Enregistré dans:

Détails bibliographiques
Auteur principal:	Dimonaco, Nicholas J.
Format:	Preprint
Publié:	2024
Sujets:	Genomics
Accès en ligne:	Acceder al recurso
Tags:	Ajouter un tag Pas de tags, Soyez le premier à ajouter un tag!

Documents similaires

Robust Clustering Analysis of Genes Related to Age-related Macular Degeneration using RNA-Seq
par: Gutierrez, Brayan, et autres
Publié: (2026)

Popping Bubbles in Pangenome Graphs
par: Mwaniki, Njagi, et autres
Publié: (2024)

SeqManager: A Web-Based Tool for Efficient Sequencing Data Storage Management and Duplicate Detection
par: Celerie, Margot, et autres
Publié: (2025)

Pangenome insights into structural variation and functional diversification of barley CCT motif genes
par: Zihao Zhu, et autres
Publié: (2025)

Adversarial Domain Adaptation Enables Knowledge Transfer Across Heterogeneous RNA-Seq Datasets
par: Dradjat, Kevin, et autres
Publié: (2026)

Advancing Risk Gene Discovery Across the Allele Frequency Spectrum
par: Caballero, Madison, et autres
Publié: (2025)

A Graphical Method for Identifying Gene Clusters from RNA Sequencing Data
par: Patock, Jake R., et autres
Publié: (2025)

Predicting Gene Disease Associations in Type 2 Diabetes Using Machine Learning on Single-Cell RNA-Seq Data
par: Toledo, Maria De La Luz Lomboy, et autres
Publié: (2026)

DeepPlantCRE: A Transformer-CNN Hybrid Framework for Plant Gene Expression Modeling and Cross-Species Generalization
par: Wu, Yingjun, et autres
Publié: (2025)

Just-DNA-Seq, open-source personal genomics platform: longevity science for everyone
par: Anton, Kulaga, et autres
Publié: (2024)

MicroTrace: A Lightweight R Tool for SNP-Based Pathogen Clustering in Outbreak Detection
par: Lai, Kaitao
Publié: (2025)

xTrimoGene: An Efficient and Scalable Representation Learner for Single-Cell RNA-Seq Data
par: Gong, Jing, et autres
Publié: (2023)

GP-DHT: A Dual-Head Transformer with Contras-tive Learning for Predicting Gene Regulatory Rela-tionships across Species from Single-Cell Data
par: Yan, Shuai, et autres
Publié: (2026)

The Canadian VirusSeq Data Portal & Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology
par: Gill, Erin E., et autres
Publié: (2024)

Spatial Transcriptomics Iterative Hierarchical Clustering (stIHC): A Novel Method for Identifying Spatial Gene Co-Expression Modules
par: Higgins, Catherine, et autres
Publié: (2025)

Central Dogma Transformer III: Interpretable AI Across DNA, RNA, and Protein
par: Ota, Nobuyuki
Publié: (2026)

CFM-GP: Unified Conditional Flow Matching to Learn Gene Perturbation Across Cell Types
par: Abir, Abrar Rahman, et autres
Publié: (2025)

Hierarchical Bayesian Model for Gene Deconvolution and Functional Analysis in Human Endometrium Across the Menstrual Cycle
par: Su, Crystal, et autres
Publié: (2025)

Causal Discovery on Dependent Mixed Data with Applications to Gene Regulatory Network Inference
par: Chen, Alex, et autres
Publié: (2026)

The Genomics Revolution in Nonmodel Species: Predictions vs. Reality for Salmonids.
par: May, Samuel A, et autres
Publié: (2025)

Whole Genome Transformer for Gene Interaction Effects in Microbiome Habitat Specificity
par: Li, Zhufeng, et autres
Publié: (2024)

DNA Language Model and Interpretable Graph Neural Network Identify Genes and Pathways Involved in Rare Diseases
par: Saadat, Ali, et autres
Publié: (2024)

Biological Sequence Clustering: A Survey
par: Zhang, Simeng, et autres
Publié: (2026)

Data Smoothing Filling Method based on ScRNA-Seq Data Zero-Value Identification
par: Jiang, Linfeng, et autres
Publié: (2024)

Knowledge-Guided Biomarker Identification for Label-Free Single-Cell RNA-Seq Data: A Reinforcement Learning Perspective
par: Xiao, Meng, et autres
Publié: (2025)

Five-Gene Expression Formula Accurately Detects Hepatocellular Carcinoma Tumors
par: Ogholbake, Aram Ansary, et autres
Publié: (2025)

Toward Interpretable and Generalizable AI in Regulatory Genomics
par: Nagai, Masayuki, et autres
Publié: (2026)

ViralQC: A Tool for Assessing Completeness and Contamination of Predicted Viral Contigs
par: Peng, Cheng, et autres
Publié: (2025)

Pangenome biology and evolution in harmful algal-bloom-forming pelagophytes.
par: Sibbald, Shannon J, et autres
Publié: (2025)

Cross-Species Antimicrobial Resistance Prediction from Genomic Foundation Models
par: Tai, Huilin
Publié: (2026)

Assessing Concordance between RNA-Seq and NanoString Technologies in Ebola-Infected Nonhuman Primates Using Machine Learning
par: Rezapour, Mostafa, et autres
Publié: (2024)

AmpliconHunter: A Scalable Tool for PCR Amplicon Prediction from Microbiome Samples
par: Howard-Stone, Rye, et autres
Publié: (2025)

Hierarchical Classification for Predicting Metastasis Using Elastic-Net Regularization on Gene Expression Data
par: Agyare, Benjamin Osafo, et autres
Publié: (2024)

Gene finding revisited: improved robustness through structured decoding from learned embeddings
par: Marin, Frederikke I., et autres
Publié: (2025)

The Pangenome
Publié: (2020)

SeqMate: A Novel Large Language Model Pipeline for Automating RNA Sequencing
par: Mondal, Devam, et autres
Publié: (2024)

Genomic Analysis of Date Palm Fruit Size Traits and Identification of Candidate Genes through GWAS
par: Younuskunju, Shameem, et autres
Publié: (2025)

PhenotypeToGeneDownloaderR: automated multi-source retrieval and validation of phenotype-associated genes
par: Muneeb, Muhammad, et autres
Publié: (2026)

A Statistical Framework for Co-Mediators of Zero-Inflated Single-Cell RNA-Seq Data
par: Ahn, Seungjun, et autres
Publié: (2025)

Gosling Designer: a Platform to Democratize Construction and Sharing of Genomics Data Visualization Tools
par: L'Yi, Sehi, et autres
Publié: (2025)