Integrating spatially-resolved transcriptomics data across tissues and individuals: challenges and opportunities
Fuente:
arXiv
Saved in:
| Main Authors: | Guo, Boyi, Ling, Wodan, Kwon, Sang Ho, Panwar, Pratibha, Ghazanfar, Shila, Martinowich, Keri, Hicks, Stephanie C. |
|---|---|
| Format: | Preprint |
| Published: |
2024
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Integrating Spatially‐Resolved Transcriptomics Data Across Tissues and Individuals: Challenges and Opportunities
by: Boyi Guo, et al.
Published: (2025)
by: Boyi Guo, et al.
Published: (2025)
Insights, opportunities and challenges provided by large cell atlases
by: Hemberg, Martin, et al.
Published: (2024)
by: Hemberg, Martin, et al.
Published: (2024)
A selective review of recent developments in spatially variable gene detection for spatial transcriptomics
by: Adhikari, Sikta Das, et al.
Published: (2023)
by: Adhikari, Sikta Das, et al.
Published: (2023)
Machine Learning for analysis of Multiple Sclerosis cross-tissue bulk and single-cell transcriptomics data
by: Massafra, Francesco, et al.
Published: (2026)
by: Massafra, Francesco, et al.
Published: (2026)
Systematic evaluation of the isolated effect of tissue environment on the transcriptome using a single-cell RNA-seq atlas dataset
by: Okada, Daigo, et al.
Published: (2024)
by: Okada, Daigo, et al.
Published: (2024)
SAGE-FM: A lightweight and interpretable spatial transcriptomics foundation model
by: Zhan, Xianghao, et al.
Published: (2026)
by: Zhan, Xianghao, et al.
Published: (2026)
Comparison of algorithms used in single-cell transcriptomic data analysis
by: Isbarov, Jafar, et al.
Published: (2024)
by: Isbarov, Jafar, et al.
Published: (2024)
Characterizing virulence differences in a parasitoid wasp through comparative transcriptomic and proteomic
by: Gornard, Samuel, et al.
Published: (2024)
by: Gornard, Samuel, et al.
Published: (2024)
Leaf transcriptome differences between diploid and tetraploid bahiagrass
by: Maricel Podio, et al.
Published: (2026)
by: Maricel Podio, et al.
Published: (2026)
Combined transcriptomic and metabolomic analyses reveal the pharmacognostic mechanism of the metabolism of flavonoids in different parts of Polygonum capitatum
by: Jie Yang, et al.
Published: (2025)
by: Jie Yang, et al.
Published: (2025)
Genetic and transcriptomic analysis of lentil seed imbibition and dormancy in relation to its domestication
by: Azalea Guerra‐García, et al.
Published: (2025)
by: Azalea Guerra‐García, et al.
Published: (2025)
Polygenic Risk Score in Africa Population: Progress and challenges
by: Adam, Yagoub, et al.
Published: (2021)
by: Adam, Yagoub, et al.
Published: (2021)
Perspective on recent developments and challenges in regulatory and systems genomics
by: Zeiltinger, Julia, et al.
Published: (2024)
by: Zeiltinger, Julia, et al.
Published: (2024)
How chromatin interactions shed light on interpreting non-coding genomic variants: opportunities and future direc-tions
by: Liang, Yuheng, et al.
Published: (2024)
by: Liang, Yuheng, et al.
Published: (2024)
Large-scale spatial variable gene atlas for spatial transcriptomics
by: Chen, Jiawen, et al.
Published: (2025)
by: Chen, Jiawen, et al.
Published: (2025)
T-cell repertoire response in individuals with post-acute sequelae of COVID-19
by: Montague, Zachary, et al.
Published: (2026)
by: Montague, Zachary, et al.
Published: (2026)
Use of 3D chaos game representation to quantify DNA sequence similarity with applications for hierarchical clustering
by: Young, Stephanie, et al.
Published: (2024)
by: Young, Stephanie, et al.
Published: (2024)
Investigating DNA words and their distributions across the tree of life
by: Koilakos, Charalampos, et al.
Published: (2025)
by: Koilakos, Charalampos, et al.
Published: (2025)
MetaHQ: Harmonized, high-quality metadata annotations of public omics samples and studies
by: Hicks, Parker, et al.
Published: (2026)
by: Hicks, Parker, et al.
Published: (2026)
Guide to k-mer approaches for genomics across the tree of life
by: Jenike, Katharine M., et al.
Published: (2024)
by: Jenike, Katharine M., et al.
Published: (2024)
Integrating GWAS with a gene co‐expression network better prioritizes candidate genes associated with root metaxylem phenes in maize
by: Stephanie P. Klein, et al.
Published: (2024)
by: Stephanie P. Klein, et al.
Published: (2024)
Genome‐wide association study reveals the genetic architecture of drought tolerance in maize using yield‐based resistance indices and transcriptomic evidence
by: Haoyang Li, et al.
Published: (2026)
by: Haoyang Li, et al.
Published: (2026)
Genome-resolved biogeography of Phaeocystales, cosmopolitan bloom-forming algae.
by: Füssy, Zoltán, et al.
Published: (2025)
by: Füssy, Zoltán, et al.
Published: (2025)
An improved, high yield method for isolating nuclei from individual zebrafish embryos for single-nucleus RNA sequencing
by: Rostomily, Clifford, et al.
Published: (2024)
by: Rostomily, Clifford, et al.
Published: (2024)
Benchmarking end-to-end genotype-to-phenotype prediction workflows across 80 openSNP phenotypes
by: Muneeb, Muhammad, et al.
Published: (2026)
by: Muneeb, Muhammad, et al.
Published: (2026)
Sweetwater: An interpretable and adaptive autoencoder for efficient tissue deconvolution
by: de la Fuente, Jesus, et al.
Published: (2023)
by: de la Fuente, Jesus, et al.
Published: (2023)
Single-cell spatial (scs) omics: Recent developments in data analysis
by: Camacho, José, et al.
Published: (2024)
by: Camacho, José, et al.
Published: (2024)
Graph-Based Multi-Omics Integration Improves Subtype Recovery and Survival Prediction Over Classical Integration Strategies in TCGA-BRCA
by: Ahmad, Taha
Published: (2026)
by: Ahmad, Taha
Published: (2026)
A harmonized benchmarking framework for implementation-aware evaluation of 46 polygenic risk score tools across binary and continuous phenotypes
by: Muneeb, Muhammad, et al.
Published: (2026)
by: Muneeb, Muhammad, et al.
Published: (2026)
Lingshu-Cell: A generative cellular world model for transcriptome modeling toward virtual cells
by: Zhang, Han, et al.
Published: (2026)
by: Zhang, Han, et al.
Published: (2026)
History and current status of embryogenic culture‐based tissue culture, transformation and gene editing of maize ( Zea mays L.)
by: Frank L. McFarland, et al.
Published: (2024)
by: Frank L. McFarland, et al.
Published: (2024)
A robust, scalable K-statistic for quantifying immune cell clustering in spatial proteomics data
by: Wrobel, Julia, et al.
Published: (2024)
by: Wrobel, Julia, et al.
Published: (2024)
A Chromosome-level Assembly and Functional Genomic Resources for the Model Annelid Capitella teleta.
by: Davies, Billie E, et al.
Published: (2026)
by: Davies, Billie E, et al.
Published: (2026)
scMEDAL for the interpretable analysis of single-cell transcriptomics data with batch effect visualization using a deep mixed effects autoencoder
by: Andrade, Aixa X., et al.
Published: (2024)
by: Andrade, Aixa X., et al.
Published: (2024)
Hierarchical novel class discovery for single-cell transcriptomic profiles
by: Senoussi, Malek, et al.
Published: (2024)
by: Senoussi, Malek, et al.
Published: (2024)
GP-DHT: A Dual-Head Transformer with Contras-tive Learning for Predicting Gene Regulatory Rela-tionships across Species from Single-Cell Data
by: Yan, Shuai, et al.
Published: (2026)
by: Yan, Shuai, et al.
Published: (2026)
Integrative Pan-Cancer Analysis of RNMT: a Potential Prognostic and Immunological Biomarker
by: Huang, Shuqiang, et al.
Published: (2022)
by: Huang, Shuqiang, et al.
Published: (2022)
Histopathology-centered Computational Evolution of Spatial Omics: Integration, Mapping, and Foundation Models
by: Hao, Ninghui, et al.
Published: (2026)
by: Hao, Ninghui, et al.
Published: (2026)
Complete genome sequence of the marine mangrove fungus Sarcopodium sp.QM3-1 confirmed its high potential for antimicrobial activity.
by: Zhang, Wenzhou, et al.
Published: (2025)
by: Zhang, Wenzhou, et al.
Published: (2025)
Common signatures of selection reveal target loci for breeding across soybean populations
by: João Paulo Gomes Viana, et al.
Published: (2024)
by: João Paulo Gomes Viana, et al.
Published: (2024)
Similar Items
-
Integrating Spatially‐Resolved Transcriptomics Data Across Tissues and Individuals: Challenges and Opportunities
by: Boyi Guo, et al.
Published: (2025) -
Insights, opportunities and challenges provided by large cell atlases
by: Hemberg, Martin, et al.
Published: (2024) -
A selective review of recent developments in spatially variable gene detection for spatial transcriptomics
by: Adhikari, Sikta Das, et al.
Published: (2023) -
Machine Learning for analysis of Multiple Sclerosis cross-tissue bulk and single-cell transcriptomics data
by: Massafra, Francesco, et al.
Published: (2026) -
Systematic evaluation of the isolated effect of tissue environment on the transcriptome using a single-cell RNA-seq atlas dataset
by: Okada, Daigo, et al.
Published: (2024)