Coarse-grained models for phase separation in DNA-based fluids
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arXiv
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| Auteurs principaux: | , |
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| Format: | Preprint |
| Publié: |
2024
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| _version_ | 1866915286815342592 |
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| author | De Karmakar, Soumen Speck, Thomas |
| author_facet | De Karmakar, Soumen Speck, Thomas |
| contents | DNA is now firmly established as a versatile and robust platform for achieving synthetic nanostructures. While the folding of single molecules into complex structures is routinely achieved through engineering basepair sequences, much less is known about the emergence of structure on larger scales in DNA fluids. The fact that polymeric DNA fluids can undergo phase separation into dense fluid and dilute gas opens avenues to design hierachical and multifarious assemblies. Here we investigate to which extent the phase behavior of single-stranded DNA fluids is captured by a minimal model of semiflexible charged homopolymers while neglecting specific hybridization interactions. We first characterize the single-polymer behavior and then perform direct coexistence simulations to test the model against experimental data. We conclude that counterions not only determine the effective range of direct electrostatic interactions but also the effective attractions. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2408_04435 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Coarse-grained models for phase separation in DNA-based fluids De Karmakar, Soumen Speck, Thomas Soft Condensed Matter DNA is now firmly established as a versatile and robust platform for achieving synthetic nanostructures. While the folding of single molecules into complex structures is routinely achieved through engineering basepair sequences, much less is known about the emergence of structure on larger scales in DNA fluids. The fact that polymeric DNA fluids can undergo phase separation into dense fluid and dilute gas opens avenues to design hierachical and multifarious assemblies. Here we investigate to which extent the phase behavior of single-stranded DNA fluids is captured by a minimal model of semiflexible charged homopolymers while neglecting specific hybridization interactions. We first characterize the single-polymer behavior and then perform direct coexistence simulations to test the model against experimental data. We conclude that counterions not only determine the effective range of direct electrostatic interactions but also the effective attractions. |
| title | Coarse-grained models for phase separation in DNA-based fluids |
| topic | Soft Condensed Matter |
| url | https://arxiv.org/abs/2408.04435 |