Autoregressive Enzyme Function Prediction with Multi-scale Multi-modality Fusion
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arXiv
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| Main Authors: | Rong, Dingyi, Zheng, Wenzhuo, Zhong, Bozitao, Lin, Zhouhan, Hong, Liang, Liu, Ning |
|---|---|
| Format: | Preprint |
| Published: |
2024
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| Subjects: | |
| Online Access: | |
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