Saved in:
| Main Authors: | Liu, Ce, Wang, Jun, Cai, Zhiqiang, Wang, Yingxu, Kuang, Huizhen, Cheng, Kaihui, Zhang, Liwei, Su, Qingkun, Tang, Yining, Cao, Fenglei, Han, Limei, Zhu, Siyu, Qi, Yuan |
|---|---|
| Format: | Preprint |
| Published: |
2024
|
| Subjects: | |
| Online Access: | https://arxiv.org/abs/2408.12413 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Protein Design with Dynamic Protein Vocabulary
by: Liu, Nuowei, et al.
Published: (2025)
by: Liu, Nuowei, et al.
Published: (2025)
Integrating Protein Dynamics into Structure-Based Drug Design via Full-Atom Stochastic Flows
by: Zhou, Xiangxin, et al.
Published: (2025)
by: Zhou, Xiangxin, et al.
Published: (2025)
Protein Conformation Generation via Force-Guided SE(3) Diffusion Models
by: Wang, Yan, et al.
Published: (2024)
by: Wang, Yan, et al.
Published: (2024)
QMProt: A Comprehensive Dataset of Quantum Properties for Proteins
by: Sala, Laia Coronas, et al.
Published: (2025)
by: Sala, Laia Coronas, et al.
Published: (2025)
Docking-Aware Attention: Dynamic Protein Representations through Molecular Context Integration
by: Sicherman, Amitay, et al.
Published: (2025)
by: Sicherman, Amitay, et al.
Published: (2025)
XDIP: A Curated X-ray Absorption Spectrum Dataset for Iron-Containing Proteins
by: Wang, Yufeng, et al.
Published: (2025)
by: Wang, Yufeng, et al.
Published: (2025)
AlphaFolding: 4D Diffusion for Dynamic Protein Structure Prediction with Reference and Motion Guidance
by: Cheng, Kaihui, et al.
Published: (2024)
by: Cheng, Kaihui, et al.
Published: (2024)
Efficiently Predicting Mutational Effect on Homologous Proteins by Evolution Encoding
by: Zhong, Zhiqiang, et al.
Published: (2024)
by: Zhong, Zhiqiang, et al.
Published: (2024)
MAP Format for Representing Chemical Modifications, Annotations, and Mutations in Protein Sequences: An Extension of the FASTA Format
by: Shendre, Akshay, et al.
Published: (2025)
by: Shendre, Akshay, et al.
Published: (2025)
Learning Structure, Energy, and Dynamics: A Survey of Artificial Intelligence for Protein Dynamics
by: Tang, Haocheng, et al.
Published: (2026)
by: Tang, Haocheng, et al.
Published: (2026)
Accelerating Protein Molecular Dynamics Simulation with DeepJump
by: Costa, Allan dos Santos, et al.
Published: (2025)
by: Costa, Allan dos Santos, et al.
Published: (2025)
Sequence-Augmented SE(3)-Flow Matching For Conditional Protein Backbone Generation
by: Huguet, Guillaume, et al.
Published: (2024)
by: Huguet, Guillaume, et al.
Published: (2024)
Steering Protein Family Design through Profile Bayesian Flow
by: Gong, Jingjing, et al.
Published: (2025)
by: Gong, Jingjing, et al.
Published: (2025)
Scalable Spatio-Temporal SE(3) Diffusion for Long-Horizon Protein Dynamics
by: Shoghi, Nima, et al.
Published: (2026)
by: Shoghi, Nima, et al.
Published: (2026)
A Comprehensive Review of Protein Language Models
by: Wang, Lei, et al.
Published: (2025)
by: Wang, Lei, et al.
Published: (2025)
PLD-Tree: Persistent Laplacian Decision Tree for Protein-Protein Binding Free Energy Prediction
by: Xu, Xingjian, et al.
Published: (2024)
by: Xu, Xingjian, et al.
Published: (2024)
AMix-1: A Pathway to Test-Time Scalable Protein Foundation Model
by: Lv, Changze, et al.
Published: (2025)
by: Lv, Changze, et al.
Published: (2025)
Multi-Scale Representation Learning for Protein Fitness Prediction
by: Zhang, Zuobai, et al.
Published: (2024)
by: Zhang, Zuobai, et al.
Published: (2024)
Entropy Transfer Throughout the Structure of PDZ-2 and TIM-Barrel Proteins. A Dynamic Gaussian Network Model Study
by: Galaz, German Mino, et al.
Published: (2025)
by: Galaz, German Mino, et al.
Published: (2025)
Hermes: Large DEL Datasets Train Generalizable Protein-Ligand Binding Prediction Models
by: Kleinsasser, Maxwell, et al.
Published: (2026)
by: Kleinsasser, Maxwell, et al.
Published: (2026)
A Novel 4-D Dataset Paradigm for Studying Complete Ligand-Protein Dissociation Dynamics
by: Li, Maodong, et al.
Published: (2025)
by: Li, Maodong, et al.
Published: (2025)
IDP-Bert: Predicting Properties of Intrinsically Disordered Proteins (IDP) Using Large Language Models
by: Mollaei, Parisa, et al.
Published: (2024)
by: Mollaei, Parisa, et al.
Published: (2024)
Bridging Classical Molecular Dynamics and Quantum Foundations for Comprehensive Protein Structural Analysis
by: Roosan, Don, et al.
Published: (2025)
by: Roosan, Don, et al.
Published: (2025)
Few-shot Protein Fitness Prediction via In-context Learning and Test-time Training
by: Teufel, Felix, et al.
Published: (2025)
by: Teufel, Felix, et al.
Published: (2025)
3D-Mol: A Novel Contrastive Learning Framework for Molecular Property Prediction with 3D Information
by: Kuang, Taojie, et al.
Published: (2023)
by: Kuang, Taojie, et al.
Published: (2023)
PDFBench: A Benchmark for De novo Protein Design from Function
by: Kuang, Jiahao, et al.
Published: (2025)
by: Kuang, Jiahao, et al.
Published: (2025)
FlexSBDD: Structure-Based Drug Design with Flexible Protein Modeling
by: Zhang, Zaixi, et al.
Published: (2024)
by: Zhang, Zaixi, et al.
Published: (2024)
Beyond Ensembles: Simulating All-Atom Protein Dynamics in a Learned Latent Space
by: Sengar, Aditya, et al.
Published: (2025)
by: Sengar, Aditya, et al.
Published: (2025)
SCOP: A Sequence-Structure Contrast-Aware Framework for Protein Function Prediction
by: Ma, Runze, et al.
Published: (2024)
by: Ma, Runze, et al.
Published: (2024)
UniSite: The First Cross-Structure Dataset and Learning Framework for End-to-End Ligand Binding Site Detection
by: Fan, Jigang, et al.
Published: (2025)
by: Fan, Jigang, et al.
Published: (2025)
SE(3)-Equivariant Ternary Complex Prediction Towards Target Protein Degradation
by: Xue, Fanglei, et al.
Published: (2025)
by: Xue, Fanglei, et al.
Published: (2025)
Protein FID: Improved Evaluation of Protein Structure Generative Models
by: Faltings, Felix, et al.
Published: (2025)
by: Faltings, Felix, et al.
Published: (2025)
Pro-PRIME: A general Temperature-Guided Language model to engineer enhanced Stability and Activity in Proteins
by: Jiang, Fan, et al.
Published: (2023)
by: Jiang, Fan, et al.
Published: (2023)
HemePLM-Diffuse: A Scalable Generative Framework for Protein-Ligand Dynamics in Large Biomolecular System
by: Thakur, Rakesh, et al.
Published: (2025)
by: Thakur, Rakesh, et al.
Published: (2025)
PETIMOT: A Novel Framework for Inferring Protein Motions from Sparse Data Using SE(3)-Equivariant Graph Neural Networks
by: Lombard, Valentin, et al.
Published: (2025)
by: Lombard, Valentin, et al.
Published: (2025)
Fold-switching Proteins
by: Chakravarty, Devlina, et al.
Published: (2025)
by: Chakravarty, Devlina, et al.
Published: (2025)
Modal Geometry Governs Proteoform Dynamics
by: Cobley, James N.
Published: (2025)
by: Cobley, James N.
Published: (2025)
Targeting Melanoma-Specific Tyrosinase: Cyclic Peptide Disrupts Actin Dynamics for Precision Apoptosis Induction
by: Zhao, Ruoyang, et al.
Published: (2025)
by: Zhao, Ruoyang, et al.
Published: (2025)
DeepRLI: A Multi-objective Framework for Universal Protein--Ligand Interaction Prediction
by: Lin, Haoyu, et al.
Published: (2024)
by: Lin, Haoyu, et al.
Published: (2024)
Structure-Enhanced Protein Instruction Tuning: Towards General-Purpose Protein Understanding with LLMs
by: Wu, Wei, et al.
Published: (2024)
by: Wu, Wei, et al.
Published: (2024)
Similar Items
-
Protein Design with Dynamic Protein Vocabulary
by: Liu, Nuowei, et al.
Published: (2025) -
Integrating Protein Dynamics into Structure-Based Drug Design via Full-Atom Stochastic Flows
by: Zhou, Xiangxin, et al.
Published: (2025) -
Protein Conformation Generation via Force-Guided SE(3) Diffusion Models
by: Wang, Yan, et al.
Published: (2024) -
QMProt: A Comprehensive Dataset of Quantum Properties for Proteins
by: Sala, Laia Coronas, et al.
Published: (2025) -
Docking-Aware Attention: Dynamic Protein Representations through Molecular Context Integration
by: Sicherman, Amitay, et al.
Published: (2025)