Peptide Classification from Statistical Analysis of Nanopore Translocation Experiments
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arXiv
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| Auteurs principaux: | , , , , |
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| Format: | Preprint |
| Publié: |
2024
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| _version_ | 1866917983120523264 |
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| author | Hoßbach, Julian Tovey, Samuel Ensslen, Tobias Behrends, Jan C. Holm, Christian |
| author_facet | Hoßbach, Julian Tovey, Samuel Ensslen, Tobias Behrends, Jan C. Holm, Christian |
| contents | Protein characterization using nanopore-based devices promises to be a breakthrough method in basic research, diagnostics, and analytics. Current research includes the use of machine learning to achieve this task. In this work, a comprehensive statistical analysis of nanopore current signals is performed and demonstrated to be sufficient for classifying up to 42 peptides with over 70 % accuracy. Two sets of features, the statistical moments and the catch22 set, are compared both in their representations and after training small classifier neural networks. We demonstrate that complex features of the events, captured in both the catch22 set and the central moments, are key in classifying peptides with otherwise similar mean currents. These results highlight the efficacy of purely statistical analysis of nanopore data and suggest a path forward for more sophisticated classification techniques. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2408_14275 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Peptide Classification from Statistical Analysis of Nanopore Translocation Experiments Hoßbach, Julian Tovey, Samuel Ensslen, Tobias Behrends, Jan C. Holm, Christian Biological Physics Protein characterization using nanopore-based devices promises to be a breakthrough method in basic research, diagnostics, and analytics. Current research includes the use of machine learning to achieve this task. In this work, a comprehensive statistical analysis of nanopore current signals is performed and demonstrated to be sufficient for classifying up to 42 peptides with over 70 % accuracy. Two sets of features, the statistical moments and the catch22 set, are compared both in their representations and after training small classifier neural networks. We demonstrate that complex features of the events, captured in both the catch22 set and the central moments, are key in classifying peptides with otherwise similar mean currents. These results highlight the efficacy of purely statistical analysis of nanopore data and suggest a path forward for more sophisticated classification techniques. |
| title | Peptide Classification from Statistical Analysis of Nanopore Translocation Experiments |
| topic | Biological Physics |
| url | https://arxiv.org/abs/2408.14275 |