Novel Methods for Analyzing Cellular Interactions in Deep Learning-Based Image Cytometry: Spatial Interaction Potential and Co-Localization Index
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arXiv
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| Auteurs principaux: | , , |
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| Format: | Preprint |
| Publié: |
2024
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| _version_ | 1866914929377804288 |
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| author | Nagasaka, Toru Yamashita, Kimihiro Fujita, Mitsugu |
| author_facet | Nagasaka, Toru Yamashita, Kimihiro Fujita, Mitsugu |
| contents | The study presents a novel approach for quantifying cellular interactions in digital pathology using deep learning-based image cytometry. Traditional methods struggle with the diversity and heterogeneity of cells within tissues. To address this, we introduce the Spatial Interaction Potential (SIP) and the Co-Localization Index (CLI), leveraging deep learning classification probabilities. SIP assesses the potential for cell-to-cell interactions, similar to an electric field, while CLI incorporates distances between cells, accounting for dynamic cell movements. Our approach enhances traditional methods, providing a more sophisticated analysis of cellular interactions. We validate SIP and CLI through simulations and apply them to colorectal cancer specimens, demonstrating strong correlations with actual biological data. This innovative method offers significant improvements in understanding cellular interactions and has potential applications in various fields of digital pathology. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2408_16008 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Novel Methods for Analyzing Cellular Interactions in Deep Learning-Based Image Cytometry: Spatial Interaction Potential and Co-Localization Index Nagasaka, Toru Yamashita, Kimihiro Fujita, Mitsugu Quantitative Methods Artificial Intelligence The study presents a novel approach for quantifying cellular interactions in digital pathology using deep learning-based image cytometry. Traditional methods struggle with the diversity and heterogeneity of cells within tissues. To address this, we introduce the Spatial Interaction Potential (SIP) and the Co-Localization Index (CLI), leveraging deep learning classification probabilities. SIP assesses the potential for cell-to-cell interactions, similar to an electric field, while CLI incorporates distances between cells, accounting for dynamic cell movements. Our approach enhances traditional methods, providing a more sophisticated analysis of cellular interactions. We validate SIP and CLI through simulations and apply them to colorectal cancer specimens, demonstrating strong correlations with actual biological data. This innovative method offers significant improvements in understanding cellular interactions and has potential applications in various fields of digital pathology. |
| title | Novel Methods for Analyzing Cellular Interactions in Deep Learning-Based Image Cytometry: Spatial Interaction Potential and Co-Localization Index |
| topic | Quantitative Methods Artificial Intelligence |
| url | https://arxiv.org/abs/2408.16008 |