VLM4Bio: A Benchmark Dataset to Evaluate Pretrained Vision-Language Models for Trait Discovery from Biological Images

Fuente: arXiv
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Autores principales: Maruf, M., Daw, Arka, Mehrab, Kazi Sajeed, Manogaran, Harish Babu, Neog, Abhilash, Sawhney, Medha, Khurana, Mridul, Balhoff, James P., Bakis, Yasin, Altintas, Bahadir, Thompson, Matthew J., Campolongo, Elizabeth G., Uyeda, Josef C., Lapp, Hilmar, Bart, Henry L., Mabee, Paula M., Su, Yu, Chao, Wei-Lun, Stewart, Charles, Berger-Wolf, Tanya, Dahdul, Wasila, Karpatne, Anuj
Formato: Preprint
Publicado: 2024
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author Maruf, M.
Daw, Arka
Mehrab, Kazi Sajeed
Manogaran, Harish Babu
Neog, Abhilash
Sawhney, Medha
Khurana, Mridul
Balhoff, James P.
Bakis, Yasin
Altintas, Bahadir
Thompson, Matthew J.
Campolongo, Elizabeth G.
Uyeda, Josef C.
Lapp, Hilmar
Bart, Henry L.
Mabee, Paula M.
Su, Yu
Chao, Wei-Lun
Stewart, Charles
Berger-Wolf, Tanya
Dahdul, Wasila
Karpatne, Anuj
author_facet Maruf, M.
Daw, Arka
Mehrab, Kazi Sajeed
Manogaran, Harish Babu
Neog, Abhilash
Sawhney, Medha
Khurana, Mridul
Balhoff, James P.
Bakis, Yasin
Altintas, Bahadir
Thompson, Matthew J.
Campolongo, Elizabeth G.
Uyeda, Josef C.
Lapp, Hilmar
Bart, Henry L.
Mabee, Paula M.
Su, Yu
Chao, Wei-Lun
Stewart, Charles
Berger-Wolf, Tanya
Dahdul, Wasila
Karpatne, Anuj
contents Images are increasingly becoming the currency for documenting biodiversity on the planet, providing novel opportunities for accelerating scientific discoveries in the field of organismal biology, especially with the advent of large vision-language models (VLMs). We ask if pre-trained VLMs can aid scientists in answering a range of biologically relevant questions without any additional fine-tuning. In this paper, we evaluate the effectiveness of 12 state-of-the-art (SOTA) VLMs in the field of organismal biology using a novel dataset, VLM4Bio, consisting of 469K question-answer pairs involving 30K images from three groups of organisms: fishes, birds, and butterflies, covering five biologically relevant tasks. We also explore the effects of applying prompting techniques and tests for reasoning hallucination on the performance of VLMs, shedding new light on the capabilities of current SOTA VLMs in answering biologically relevant questions using images. The code and datasets for running all the analyses reported in this paper can be found at https://github.com/sammarfy/VLM4Bio.
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id arxiv_https___arxiv_org_abs_2408_16176
institution arXiv
publishDate 2024
record_format arxiv
spellingShingle VLM4Bio: A Benchmark Dataset to Evaluate Pretrained Vision-Language Models for Trait Discovery from Biological Images
Maruf, M.
Daw, Arka
Mehrab, Kazi Sajeed
Manogaran, Harish Babu
Neog, Abhilash
Sawhney, Medha
Khurana, Mridul
Balhoff, James P.
Bakis, Yasin
Altintas, Bahadir
Thompson, Matthew J.
Campolongo, Elizabeth G.
Uyeda, Josef C.
Lapp, Hilmar
Bart, Henry L.
Mabee, Paula M.
Su, Yu
Chao, Wei-Lun
Stewart, Charles
Berger-Wolf, Tanya
Dahdul, Wasila
Karpatne, Anuj
Computer Vision and Pattern Recognition
Images are increasingly becoming the currency for documenting biodiversity on the planet, providing novel opportunities for accelerating scientific discoveries in the field of organismal biology, especially with the advent of large vision-language models (VLMs). We ask if pre-trained VLMs can aid scientists in answering a range of biologically relevant questions without any additional fine-tuning. In this paper, we evaluate the effectiveness of 12 state-of-the-art (SOTA) VLMs in the field of organismal biology using a novel dataset, VLM4Bio, consisting of 469K question-answer pairs involving 30K images from three groups of organisms: fishes, birds, and butterflies, covering five biologically relevant tasks. We also explore the effects of applying prompting techniques and tests for reasoning hallucination on the performance of VLMs, shedding new light on the capabilities of current SOTA VLMs in answering biologically relevant questions using images. The code and datasets for running all the analyses reported in this paper can be found at https://github.com/sammarfy/VLM4Bio.
title VLM4Bio: A Benchmark Dataset to Evaluate Pretrained Vision-Language Models for Trait Discovery from Biological Images
topic Computer Vision and Pattern Recognition
url https://arxiv.org/abs/2408.16176