Imagen de Portada

BWT construction and search at the terabase scale

Fuente: arXiv

Guardado en:

Detalles Bibliográficos
Autor principal:	Li, Heng
Formato:	Preprint
Publicado:	2024
Materias:	Genomics
Acceso en línea:	Acceder al recurso
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

Ejemplares similares

Finding easy regions for short-read variant calling from pangenome data
por: Li, Heng
Publicado: (2025)

OmniGenBench: Automating Large-scale in-silico Benchmarking for Genomic Foundation Models
por: Yang, Heng, et al.
Publicado: (2024)

Finding low-complexity DNA sequences with longdust
por: Li, Heng, et al.
Publicado: (2025)

Challenges in structural variant calling in low-complexity regions
por: Qin, Qian, et al.
Publicado: (2025)

Improving spliced alignment by modeling splice sites with deep learning
por: Yang, Siying, et al.
Publicado: (2025)

Exploring gene content with pangene graphs
por: Li, Heng, et al.
Publicado: (2024)

A mapping-free NLP-based technique for sequence search in Nanopore long-reads
por: Strzoda, Tomasz, et al.
Publicado: (2024)

LCPan: efficient variation graph construction using Locally Consistent Parsing
por: Ashyralyyev, Akmuhammet, et al.
Publicado: (2025)

GiantHunter: Accurate detection of giant virus in metagenomic data using reinforcement-learning and Monte Carlo tree search
por: Qu, Fuchuan, et al.
Publicado: (2025)

GPU-accelerated single-cell analysis at scale with rapids-singlecell
por: Dicks, Severin, et al.
Publicado: (2026)

mSigSDK -- private, at scale, computation of mutation signatures
por: Ge, Aaron, et al.
Publicado: (2023)

needLR: Long-read structural variant annotation with population-scale frequency estimation
por: Gustafson, Jonas A., et al.
Publicado: (2025)

Bridging Sequence-Structure Alignment in RNA Foundation Models
por: Yang, Heng, et al.
Publicado: (2024)

Moonshine.jl: a Julia package for genome-scale model-based ancestral recombination graph inference
por: Fournier, Patrick, et al.
Publicado: (2025)

A Chromosome-level Assembly and Functional Genomic Resources for the Model Annelid Capitella teleta.
por: Davies, Billie E, et al.
Publicado: (2026)

Lightning-fast adaptive immune receptor similarity search by symmetric deletion lookup
por: Chotisorayuth, Touchchai, et al.
Publicado: (2024)

A genome-scale deep learning model to predict gene expression changes of genetic perturbations from multiplex biological networks
por: Zhan, Lingmin, et al.
Publicado: (2024)

MBGD: Microbial Genome Database for Comparative Analysis Featuring Enhanced Functionality to Characterize Gene and Genome Functions Through Large-scale Orthology Analysis.
por: Uchiyama, Ikuo, et al.
Publicado: (2025)

Genome‐wide development of intra‐ and inter‐specific transferable SSR markers and construction of a dynamic web resource for yam molecular breeding: Y2MD
por: Moussa Diouf, et al.
Publicado: (2024)

Supplementary information for "Factors influencing the accuracy and precision in dating single gene trees"
por: Louvel, Guillaume, et al.
Publicado: (2024)

Chromosome-Level Genome Assembly and Annotation of the Japanese Cutlassfish (Trichiurus japonicus): A High-Quality Genomic Resource Featuring Nuclear and Mitochondrial Completeness for Future Studies.
por: Hsu, Po-Cheng, et al.
Publicado: (2025)

OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking
por: Yang, Heng, et al.
Publicado: (2025)

Complete genome sequence of Lysinibacillus sp. WB86, a potential antimicrobial lanthipeptides producer.
por: Sun, Huai-Ying, et al.
Publicado: (2025)

Exploring genomic feature selection: A comparative analysis of GWAS and machine learning algorithms in a large‐scale soybean dataset
por: Hawlader A. Al‐Mamun, et al.
Publicado: (2024)

Integrative chromosome‐scale genome analysis of cupuassu provides insights into witches' broom disease resistance and expands genomic resources for Theobroma
por: Vinicius A. C. de Abreu, et al.
Publicado: (2026)

Reference genome for the benthic marine diatom Psammoneis japonica: Bacterial associations and repeat-driven genome size evolution in diatoms.
por: Roberts, Wade R, et al.
Publicado: (2025)

Fast and scalable Wasserstein-1 neural optimal transport solver for single-cell perturbation prediction
por: Chen, Yanshuo, et al.
Publicado: (2024)

Population and herbarium genomics provide a comprehensive framework for a revision of Microcoleus (Cyanobacteria).
por: Skoupý, Svatopluk, et al.
Publicado: (2026)

annbatch unlocks terabyte-scale training of biological data in anndata
por: Gold, Ilan, et al.
Publicado: (2026)

Population-scale Ancestral Recombination Graphs with tskit 1.0
por: Jeffery, Ben, et al.
Publicado: (2026)

Multi-megabase scale genome interpretation with genetic language models
por: Träuble, Frederik, et al.
Publicado: (2025)

A chromosome‐scale genome of Sarracenia purpurea reveals a significant expansion of plant defense and stress response gene families following paleopolyploidization
por: Magdy Alabady, et al.
Publicado: (2026)

Genome‐wide analysis of the AP2/ERF gene family in Rheum officinale Baill.: Evolution and expression profiling during plant development, abiotic stresses, and exogenous hormone responses
por: Jing Tang, et al.
Publicado: (2026)

Overexpression of the GmERF071 gene confers resistance to soybean cyst nematode in soybean
por: Erhui Xiong, et al.
Publicado: (2025)

Timestamp calibration for time-series single cell RNA-seq expression data
por: Chen, Xiran, et al.
Publicado: (2024)

Machine learning‐based research of new refractory high‐entropy alloys using guided multiobjectives search strategy
por: Gang Xu, et al.
Publicado: (2025)

Dimensionality reduction for k-means clustering of large-scale influenza mutation datasets
por: Walden, Emilee, et al.
Publicado: (2025)

Allium Vegetables Intake and Digestive System Cancer Risk: A Study Based on Mendelian Randomization, Network Pharmacology and Molecular Docking
por: Li, Shuhao, et al.
Publicado: (2024)

Polyphasic characterization and genomic insights of the cyanobacteria Aphanothece microscopica and A. stagnina from Southern Brazil with emphasis on fatty acid biosynthesis.
por: Delgado, Ronald Tarazona, et al.
Publicado: (2025)

Range-Limited Heaps' Law for Functional DNA Words in the Human Genome
por: Li, Wentian, et al.
Publicado: (2024)