Rapid GPU-Based Pangenome Graph Layout
Fuente:
arXiv
Saved in:
| Main Authors: | Li, Jiajie, Schmelzle, Jan-Niklas, Du, Yixiao, Heumos, Simon, Guarracino, Andrea, Guidi, Giulia, Prins, Pjotr, Garrison, Erik, Zhang, Zhiru |
|---|---|
| Format: | Preprint |
| Published: |
2024
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Parallel GPU-Enabled Algorithms for SpGEMM on Arbitrary Semirings with Hybrid Communication
by: McFarland, Thomas, et al.
Published: (2025)
by: McFarland, Thomas, et al.
Published: (2025)
AsyncSparse: Accelerating Sparse Matrix-Matrix Multiplication on Asynchronous GPU Architectures
by: Liu, Jie, et al.
Published: (2026)
by: Liu, Jie, et al.
Published: (2026)
Ocean: Fast Estimation-Based Sparse General Matrix-Matrix Multiplication on GPU
by: Li, Yifan, et al.
Published: (2026)
by: Li, Yifan, et al.
Published: (2026)
Fast multiplication of random dense matrices with fixed sparse matrices
by: Liang, Tianyu, et al.
Published: (2023)
by: Liang, Tianyu, et al.
Published: (2023)
WarpSpeed: A High-Performance Library for Concurrent GPU Hash Tables
by: McCoy, Hunter, et al.
Published: (2025)
by: McCoy, Hunter, et al.
Published: (2025)
A Portable Multi-GPU Solver for Collisional Plasmas with Coulombic Interactions
by: Almgren-Bell, James, et al.
Published: (2025)
by: Almgren-Bell, James, et al.
Published: (2025)
GPU-accelerated Linear Algebra for Coupled Solvers in Industrial CFD Applications with OpenFOAM
by: Oliani, Stefano, et al.
Published: (2024)
by: Oliani, Stefano, et al.
Published: (2024)
A GPU-based Compressible Combustion Solver for Applications Exhibiting Disparate Space and Time Scales
by: Carreon, Anthony, et al.
Published: (2025)
by: Carreon, Anthony, et al.
Published: (2025)
GROMACS on AMD GPU-Based HPC Platforms: Using SYCL for Performance and Portability
by: Alekseenko, Andrey, et al.
Published: (2024)
by: Alekseenko, Andrey, et al.
Published: (2024)
A GPU-boosted high-performance multi-working condition joint analysis framework for predicting dynamics of textured axial piston pump
by: Yao, Xin, et al.
Published: (2025)
by: Yao, Xin, et al.
Published: (2025)
GPU-RMQ: Accelerating Range Minimum Queries on Modern GPUs
by: Kreis, Lara, et al.
Published: (2026)
by: Kreis, Lara, et al.
Published: (2026)
Multi-Agent Online Graph Exploration on Cycles and Tadpole Graphs
by: Akker, Erik van den, et al.
Published: (2024)
by: Akker, Erik van den, et al.
Published: (2024)
High-Performance Sorting-Based k-mer Counting in Distributed Memory with Flexible Hybrid Parallelism
by: Li, Yifan, et al.
Published: (2024)
by: Li, Yifan, et al.
Published: (2024)
Characterizing GPU Energy Usage in Exascale-Ready Portable Science Applications
by: Godoy, William F., et al.
Published: (2025)
by: Godoy, William F., et al.
Published: (2025)
Designing Parallel Algorithms for Community Detection using Arachne
by: Li, Fuhuan, et al.
Published: (2025)
by: Li, Fuhuan, et al.
Published: (2025)
Communication-Avoiding SpGEMM via Trident Partitioning on Hierarchical GPU Interconnects
by: Bellavita, Julian, et al.
Published: (2026)
by: Bellavita, Julian, et al.
Published: (2026)
Parallel GPU-Accelerated Randomized Construction of Approximate Cholesky Preconditioners
by: Liang, Tianyu, et al.
Published: (2025)
by: Liang, Tianyu, et al.
Published: (2025)
Comparison of nested geometry treatments within GPU-based Monte Carlo neutron transport simulations of fission reactors
by: Biondo, Elliott, et al.
Published: (2024)
by: Biondo, Elliott, et al.
Published: (2024)
GPU-Parallelizable Randomized Sketch-and-Precondition for Linear Regression using Sparse Sign Sketches
by: Chen, Tyler, et al.
Published: (2025)
by: Chen, Tyler, et al.
Published: (2025)
Popcorn: Accelerating Kernel K-means on GPUs through Sparse Linear Algebra
by: Bellavita, Julian, et al.
Published: (2025)
by: Bellavita, Julian, et al.
Published: (2025)
A Fully GPU-Accelerated Framework for High-Performance Configuration Interaction Selection with Neural Network Quantum States
by: Sun, Daran, et al.
Published: (2026)
by: Sun, Daran, et al.
Published: (2026)
Efficient Dynamic MaxFlow Computation on GPUs
by: Kannappan, Shruthi, et al.
Published: (2025)
by: Kannappan, Shruthi, et al.
Published: (2025)
Informative Trains: A Memory-Efficient Journey to a Self-Stabilizing Leader Election Algorithm in Anonymous Graphs
by: Blin, Lelia, et al.
Published: (2026)
by: Blin, Lelia, et al.
Published: (2026)
Towards Optimal Distributed Edge Coloring with Fewer Colors
by: Jakob, Manuel, et al.
Published: (2025)
by: Jakob, Manuel, et al.
Published: (2025)
Perfect Matching with Few Link Activations
by: Mirault, Hugo, et al.
Published: (2025)
by: Mirault, Hugo, et al.
Published: (2025)
Towards True Work-Efficiency in Parallel Derandomization: MIS, Maximal Matching, and Hitting Set
by: Ghaffari, Mohsen, et al.
Published: (2025)
by: Ghaffari, Mohsen, et al.
Published: (2025)
Robust Distributed Arrays: Provably Secure Networking for Data Availability Sampling
by: Feist, Dankrad, et al.
Published: (2025)
by: Feist, Dankrad, et al.
Published: (2025)
New Distributed Interactive Proofs for Planarity: A Matter of Left and Right
by: Gil, Yuval, et al.
Published: (2025)
by: Gil, Yuval, et al.
Published: (2025)
Narrowing the LOCAL$\unicode{x2013}$CONGEST Gaps in Sparse Networks via Expander Decompositions
by: Chang, Yi-Jun, et al.
Published: (2022)
by: Chang, Yi-Jun, et al.
Published: (2022)
Improved All-Pairs Approximate Shortest Paths in Congested Clique
by: Bui, Hong Duc, et al.
Published: (2024)
by: Bui, Hong Duc, et al.
Published: (2024)
A Scalable and Unified Framework to Weighted Rank Aggregation
by: Carmel, Amir, et al.
Published: (2026)
by: Carmel, Amir, et al.
Published: (2026)
FractalSortCPU: Bandwidth-Efficient Compressed Radix Sort on CPU
by: Dang'ana, Michael
Published: (2026)
by: Dang'ana, Michael
Published: (2026)
Distributed Santa Claus via Global Rounding
by: de Vos, Tijn, et al.
Published: (2026)
by: de Vos, Tijn, et al.
Published: (2026)
On Distributed Computation of the Minimum Triangle Edge Transversal
by: Censor-Hillel, Keren, et al.
Published: (2024)
by: Censor-Hillel, Keren, et al.
Published: (2024)
Near-Optimal Distributed Ruling Sets for Trees and High-Girth Graphs
by: Baumecker, Malte, et al.
Published: (2025)
by: Baumecker, Malte, et al.
Published: (2025)
Paralleling and Accelerating Arc Consistency Enforcement with Recurrent Tensor Computations
by: Yang, Mingqi
Published: (2024)
by: Yang, Mingqi
Published: (2024)
Parallel Cluster-BFS and Applications to Shortest Paths
by: Wang, Letong, et al.
Published: (2024)
by: Wang, Letong, et al.
Published: (2024)
HiPerMotif: Novel Parallel Subgraph Isomorphism in Large-Scale Property Graphs
by: Dindoost, Mohammad, et al.
Published: (2025)
by: Dindoost, Mohammad, et al.
Published: (2025)
Improved Byzantine Agreement under an Adaptive Adversary
by: Dufoulon, Fabien, et al.
Published: (2025)
by: Dufoulon, Fabien, et al.
Published: (2025)
A Fast-Converging Decentralized Approach to the Weighted Minimum Vertex Cover Problem
by: Mordacchini, Matteo, et al.
Published: (2025)
by: Mordacchini, Matteo, et al.
Published: (2025)
Similar Items
-
Parallel GPU-Enabled Algorithms for SpGEMM on Arbitrary Semirings with Hybrid Communication
by: McFarland, Thomas, et al.
Published: (2025) -
AsyncSparse: Accelerating Sparse Matrix-Matrix Multiplication on Asynchronous GPU Architectures
by: Liu, Jie, et al.
Published: (2026) -
Ocean: Fast Estimation-Based Sparse General Matrix-Matrix Multiplication on GPU
by: Li, Yifan, et al.
Published: (2026) -
Fast multiplication of random dense matrices with fixed sparse matrices
by: Liang, Tianyu, et al.
Published: (2023) -
WarpSpeed: A High-Performance Library for Concurrent GPU Hash Tables
by: McCoy, Hunter, et al.
Published: (2025)