CanvOI, an Oncology Intelligence Foundation Model: Scaling FLOPS Differently
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| Main Authors: | , , , , , , , , , |
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| Format: | Preprint |
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2024
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| _version_ | 1866929486579105792 |
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| author | Zalach, Jonathan Gazy, Inbal Avinoam, Assaf Sinai, Ron Shmuel, Eran Gilboa, Inbar Swisher, Christine Matasci, Naim Basho, Reva Agus, David B. |
| author_facet | Zalach, Jonathan Gazy, Inbal Avinoam, Assaf Sinai, Ron Shmuel, Eran Gilboa, Inbar Swisher, Christine Matasci, Naim Basho, Reva Agus, David B. |
| contents | The rapidly evolving field of digital oncopathology faces significant challenges, including the need to address diverse and complex clinical questions, often involving rare conditions, with limited availability of labeled data. These limitations hinder the development of robust AI-driven tools in the biomedical space, where accuracy in probabilistic determinations is of utmost importance. To address this, digital pathology foundation models have begun to emerge, typically developed with the size and diversity of the pre-training dataset and model parameters in mind. Here, we present CanvOI, a ViT-g/10-based foundation model designed to enhance the capabilities of digital pathology by addressing these challenges through a different approach. Considering the unique nature of oncologic histopathological images and the requirements from the embeddings to provide meaningful representations for Multiple Instance Learning (MIL) downstream models, we chose to modify the input image characteristics. By introducing larger tile sizes (380 x 380 pixels) and smaller patch sizes (10 x 10 pixels), we were able to optimize the model's performance, pushing computational resources in a new direction and achieving state-of-the-art performance on cancer-related benchmarks. CanvOI demonstrated a 1.5-7.4% improvement in averaged AUC compared to other leading foundation models built for digital pathology. Moreover, our results demonstrate that CanvOI significantly outperformed the other models, with the performance gap widening substantially when trained on just 10% of the initial cohort. This work highlights an alternative approach that, if integrated with traditional development approaches, has the potential to advance Oncology Intelligence (OI), overcome some of the current barriers and ultimately improve the clinical outcome of cancer patients. |
| format | Preprint |
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arxiv_https___arxiv_org_abs_2409_02885 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | CanvOI, an Oncology Intelligence Foundation Model: Scaling FLOPS Differently Zalach, Jonathan Gazy, Inbal Avinoam, Assaf Sinai, Ron Shmuel, Eran Gilboa, Inbar Swisher, Christine Matasci, Naim Basho, Reva Agus, David B. Image and Video Processing Computer Vision and Pattern Recognition The rapidly evolving field of digital oncopathology faces significant challenges, including the need to address diverse and complex clinical questions, often involving rare conditions, with limited availability of labeled data. These limitations hinder the development of robust AI-driven tools in the biomedical space, where accuracy in probabilistic determinations is of utmost importance. To address this, digital pathology foundation models have begun to emerge, typically developed with the size and diversity of the pre-training dataset and model parameters in mind. Here, we present CanvOI, a ViT-g/10-based foundation model designed to enhance the capabilities of digital pathology by addressing these challenges through a different approach. Considering the unique nature of oncologic histopathological images and the requirements from the embeddings to provide meaningful representations for Multiple Instance Learning (MIL) downstream models, we chose to modify the input image characteristics. By introducing larger tile sizes (380 x 380 pixels) and smaller patch sizes (10 x 10 pixels), we were able to optimize the model's performance, pushing computational resources in a new direction and achieving state-of-the-art performance on cancer-related benchmarks. CanvOI demonstrated a 1.5-7.4% improvement in averaged AUC compared to other leading foundation models built for digital pathology. Moreover, our results demonstrate that CanvOI significantly outperformed the other models, with the performance gap widening substantially when trained on just 10% of the initial cohort. This work highlights an alternative approach that, if integrated with traditional development approaches, has the potential to advance Oncology Intelligence (OI), overcome some of the current barriers and ultimately improve the clinical outcome of cancer patients. |
| title | CanvOI, an Oncology Intelligence Foundation Model: Scaling FLOPS Differently |
| topic | Image and Video Processing Computer Vision and Pattern Recognition |
| url | https://arxiv.org/abs/2409.02885 |