XMOL: Explainable Multi-property Optimization of Molecules
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arXiv
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| Hauptverfasser: | , , , |
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| Format: | Preprint |
| Veröffentlicht: |
2024
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| _version_ | 1866910601612099584 |
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| author | Aung, Aye Phyu Phyu Chaudhary, Jay Yoon, Ji Wei Jayavelu, Senthilnath |
| author_facet | Aung, Aye Phyu Phyu Chaudhary, Jay Yoon, Ji Wei Jayavelu, Senthilnath |
| contents | Molecular optimization is a key challenge in drug discovery and material science domain, involving the design of molecules with desired properties. Existing methods focus predominantly on single-property optimization, necessitating repetitive runs to target multiple properties, which is inefficient and computationally expensive. Moreover, these methods often lack transparency, making it difficult for researchers to understand and control the optimization process. To address these issues, we propose a novel framework, Explainable Multi-property Optimization of Molecules (XMOL), to optimize multiple molecular properties simultaneously while incorporating explainability. Our approach builds on state-of-the-art geometric diffusion models, extending them to multi-property optimization through the introduction of spectral normalization and enhanced molecular constraints for stabilized training. Additionally, we integrate interpretive and explainable techniques throughout the optimization process. We evaluated XMOL on the real-world molecular datasets i.e., QM9, demonstrating its effectiveness in both single property and multiple properties optimization while offering interpretable results, paving the way for more efficient and reliable molecular design. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2409_07786 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | XMOL: Explainable Multi-property Optimization of Molecules Aung, Aye Phyu Phyu Chaudhary, Jay Yoon, Ji Wei Jayavelu, Senthilnath Machine Learning Molecular optimization is a key challenge in drug discovery and material science domain, involving the design of molecules with desired properties. Existing methods focus predominantly on single-property optimization, necessitating repetitive runs to target multiple properties, which is inefficient and computationally expensive. Moreover, these methods often lack transparency, making it difficult for researchers to understand and control the optimization process. To address these issues, we propose a novel framework, Explainable Multi-property Optimization of Molecules (XMOL), to optimize multiple molecular properties simultaneously while incorporating explainability. Our approach builds on state-of-the-art geometric diffusion models, extending them to multi-property optimization through the introduction of spectral normalization and enhanced molecular constraints for stabilized training. Additionally, we integrate interpretive and explainable techniques throughout the optimization process. We evaluated XMOL on the real-world molecular datasets i.e., QM9, demonstrating its effectiveness in both single property and multiple properties optimization while offering interpretable results, paving the way for more efficient and reliable molecular design. |
| title | XMOL: Explainable Multi-property Optimization of Molecules |
| topic | Machine Learning |
| url | https://arxiv.org/abs/2409.07786 |