:: Library Catalog

Cover Image

Saved in:

Bibliographic Details
Main Author:	Aqeel, Imra
Format:	Preprint
Published:	2024
Subjects:	Quantitative Methods Artificial Intelligence
Online Access:	https://arxiv.org/abs/2409.16486
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Learning the Interaction Prior for Protein-Protein Interaction Prediction: A Model-Agnostic Approach
by: Gao, Ziqi, et al.
Published: (2026)

AgentPLM: Agentic Protein Language Models with Reasoning-Augmented Decoding for Protein Sequence Design
by: Rahman, Sahil, et al.
Published: (2026)

COVID-19: post infection implications in different age groups, mechanism, diagnosis, effective prevention, treatment, and recommendations
by: Raheem, Muhammad Akmal, et al.
Published: (2024)

Exploring Latent Space for Generating Peptide Analogs Using Protein Language Models
by: Liang, Po-Yu, et al.
Published: (2024)

Co-Generative De Novo Functional Protein Design
by: Chen, Xinrui, et al.
Published: (2026)

Protein Structure Tokenization via Geometric Byte Pair Encoding
by: Sun, Michael, et al.
Published: (2025)

ViroGym: Realistic Large-Scale Benchmarks for Evaluating Viral Proteins
by: Zhou, Yichen, et al.
Published: (2026)

Scalable Agentic Reasoning for Designing Biologics Targeting Intrinsically Disordered Proteins
by: Sinclair, Matthew, et al.
Published: (2025)

RadDiff: Retrieval-Augmented Denoising Diffusion for Protein Inverse Folding
by: Han, Jin, et al.
Published: (2025)

ProtoCycle: Reflective Tool-Augmented Planning for Text-Guided Protein Design
by: Ge, Yutang, et al.
Published: (2026)

Beyond Protein Language Models: An Agentic LLM Framework for Mechanistic Enzyme Design
by: Jacob, Bruno, et al.
Published: (2025)

Equi-mRNA: Protein Translation Equivariant Encoding for mRNA Language Models
by: Yazdani-Jahromi, Mehdi, et al.
Published: (2025)

LAMP-PRo: Label-aware Attention for Multi-label Prediction of DNA- and RNA-binding Proteins using Protein Language Models
by: Ghosh, Nimisha, et al.
Published: (2025)

Protein Representation Learning with Sequence Information Embedding: Does it Always Lead to a Better Performance?
by: Tan, Yang, et al.
Published: (2024)

Deep Learning Model for Amyloidogenicity Prediction using a Pre-trained Protein LLM
by: Yagoub, Zohra, et al.
Published: (2025)

Decoding Drug Discovery: Exploring A-to-Z In silico Methods for Beginners
by: Rasul, Hezha O., et al.
Published: (2024)

DeepProtein: Deep Learning Library and Benchmark for Protein Sequence Learning
by: Xie, Jiaqing, et al.
Published: (2024)

GeoPl@ntNet: A Platform for Exploring Essential Biodiversity Variables
by: Picek, Lukas, et al.
Published: (2025)

Learning to Predict Mutation Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical Prompt Learning
by: Wu, Lirong, et al.
Published: (2024)

Novel Methods for Analyzing Cellular Interactions in Deep Learning-Based Image Cytometry: Spatial Interaction Potential and Co-Localization Index
by: Nagasaka, Toru, et al.
Published: (2024)

Hashing for Protein Structure Similarity Search
by: Han, Jin, et al.
Published: (2024)

HyboWaveNet: Hyperbolic Graph Neural Networks with Multi-Scale Wavelet Transform for Protein-Protein Interaction Prediction
by: Yu, Qingzhi, et al.
Published: (2025)

Training Compute-Optimal Protein Language Models
by: Cheng, Xingyi, et al.
Published: (2024)

A Text-guided Protein Design Framework
by: Liu, Shengchao, et al.
Published: (2023)

Protein Structure Tokenization: Benchmarking and New Recipe
by: Yuan, Xinyu, et al.
Published: (2025)

ProteinBench: A Holistic Evaluation of Protein Foundation Models
by: Ye, Fei, et al.
Published: (2024)

Improving AlphaFlow for Efficient Protein Ensembles Generation
by: Li, Shaoning, et al.
Published: (2024)

Elucidating the Design Space of Multimodal Protein Language Models
by: Hsieh, Cheng-Yen, et al.
Published: (2025)

Point transformer for protein structural heterogeneity analysis using CryoEM
by: Chen, Muyuan, et al.
Published: (2026)

Generation of structure-guided pMHC-I libraries using Diffusion Models
by: Mares, Sergio, et al.
Published: (2025)

Annotation-guided Protein Design with Multi-Level Domain Alignment
by: Yuan, Chaohao, et al.
Published: (2024)

Dynamics-inspired Structure Hallucination for Protein-protein Interaction Modeling
by: Wu, Fang, et al.
Published: (2026)

DCFold: Efficient Protein Structure Generation with Single Forward Pass
by: Zhang, Zhe, et al.
Published: (2026)

Fast and Interpretable Protein Substructure Alignment via Optimal Transport
by: Wang, Zhiyu, et al.
Published: (2025)

Adaptive Multimodal Protein Plug-and-Play with Diffusion-Based Priors
by: Banerjee, Amartya, et al.
Published: (2025)

A Novel Framework for Multi-Modal Protein Representation Learning
by: Zheng, Runjie, et al.
Published: (2025)

Large Language Model is Secretly a Protein Sequence Optimizer
by: Wang, Yinkai, et al.
Published: (2025)

Fast, accurate measurement of the worker populations of honey bee colonies using deep learning
by: Zhong, Junmin, et al.
Published: (2025)

Design Proteins Using Large Language Models: Enhancements and Comparative Analyses
by: Zeinalipour, Kamyar, et al.
Published: (2024)

PhaGO: Protein function annotation for bacteriophages by integrating the genomic context
by: Guan, Jiaojiao, et al.
Published: (2024)