AgentBasedModeling.jl: a tool for stochastic simulation of structured population dynamics
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arXiv
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| Main Authors: | , |
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| Format: | Preprint |
| Published: |
2024
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| _version_ | 1866910628104372224 |
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| author | Piho, Paul Thomas, Philipp |
| author_facet | Piho, Paul Thomas, Philipp |
| contents | Agent-based models capture heterogeneity among individuals in a population and are widely used in studies of multi-cellular systems, disease, epidemics and demography to name a few. However, existing frameworks consider discrete time-step simulation or assume that agents' states only change as a result of discrete events. In this note, we present AgentBasedModeling$.$jl, a Julia package for simulating stochastic agent-based population models in continuous time. The tool allows to easily specify and simulate agents evolving through generic continuous-time jump-diffusions and interacting via continuous-rate processes. AgentBasedModeling$.$jl provides a powerful methodology for studying the effects of stochasticity on structured population dynamics. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2409_19294 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | AgentBasedModeling.jl: a tool for stochastic simulation of structured population dynamics Piho, Paul Thomas, Philipp Populations and Evolution Molecular Networks Agent-based models capture heterogeneity among individuals in a population and are widely used in studies of multi-cellular systems, disease, epidemics and demography to name a few. However, existing frameworks consider discrete time-step simulation or assume that agents' states only change as a result of discrete events. In this note, we present AgentBasedModeling$.$jl, a Julia package for simulating stochastic agent-based population models in continuous time. The tool allows to easily specify and simulate agents evolving through generic continuous-time jump-diffusions and interacting via continuous-rate processes. AgentBasedModeling$.$jl provides a powerful methodology for studying the effects of stochasticity on structured population dynamics. |
| title | AgentBasedModeling.jl: a tool for stochastic simulation of structured population dynamics |
| topic | Populations and Evolution Molecular Networks |
| url | https://arxiv.org/abs/2409.19294 |