Saved in:
| Main Authors: | Zhou, Yi, Li, Yilai, Yuan, Jing, Gu, Quanquan |
|---|---|
| Format: | Preprint |
| Published: |
2024
|
| Subjects: | |
| Online Access: | https://arxiv.org/abs/2410.08631 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
CryoBench: Diverse and challenging datasets for the heterogeneity problem in cryo-EM
by: Jeon, Minkyu, et al.
Published: (2024)
by: Jeon, Minkyu, et al.
Published: (2024)
Aligning Large Language Models and Geometric Deep Models for Protein Representation
by: Shu, Dong, et al.
Published: (2024)
by: Shu, Dong, et al.
Published: (2024)
Precise Antigen-Antibody Structure Predictions Enhance Antibody Development with HelixFold-Multimer
by: Gao, Jie, et al.
Published: (2024)
by: Gao, Jie, et al.
Published: (2024)
PepHarmony: A Multi-View Contrastive Learning Framework for Integrated Sequence and Structure-Based Peptide Encoding
by: Zhang, Ruochi, et al.
Published: (2024)
by: Zhang, Ruochi, et al.
Published: (2024)
ProteinGPT: Multimodal LLM for Protein Property Prediction and Structure Understanding
by: Xiao, Yijia, et al.
Published: (2024)
by: Xiao, Yijia, et al.
Published: (2024)
PILOT: Equivariant diffusion for pocket conditioned de novo ligand generation with multi-objective guidance via importance sampling
by: Cremer, Julian, et al.
Published: (2024)
by: Cremer, Julian, et al.
Published: (2024)
ACP-ESM: A novel framework for classification of anticancer peptides using protein-oriented transformer approach
by: Kilimci, Zeynep Hilal, et al.
Published: (2024)
by: Kilimci, Zeynep Hilal, et al.
Published: (2024)
Effective Protein-Protein Interaction Exploration with PPIretrieval
by: Hua, Chenqing, et al.
Published: (2024)
by: Hua, Chenqing, et al.
Published: (2024)
Aligning Proteins and Language: A Foundation Model for Protein Retrieval
by: Wu, Qifeng, et al.
Published: (2025)
by: Wu, Qifeng, et al.
Published: (2025)
RNA-GPT: Multimodal Generative System for RNA Sequence Understanding
by: Xiao, Yijia, et al.
Published: (2024)
by: Xiao, Yijia, et al.
Published: (2024)
Text-Guided Molecule Generation with Diffusion Language Model
by: Gong, Haisong, et al.
Published: (2024)
by: Gong, Haisong, et al.
Published: (2024)
Protein Large Language Models: A Comprehensive Survey
by: Xiao, Yijia, et al.
Published: (2025)
by: Xiao, Yijia, et al.
Published: (2025)
3D-MolT5: Leveraging Discrete Structural Information for Molecule-Text Modeling
by: Pei, Qizhi, et al.
Published: (2024)
by: Pei, Qizhi, et al.
Published: (2024)
Task-Specific Sparse Feature Masks for Molecular Toxicity Prediction with Chemical Language Models
by: Lee, Kwun Sy, et al.
Published: (2025)
by: Lee, Kwun Sy, et al.
Published: (2025)
AbBiBench: A Benchmark for Antibody Binding Affinity Maturation and Design
by: Zhao, Xinyan, et al.
Published: (2025)
by: Zhao, Xinyan, et al.
Published: (2025)
BConformeR: A Conformer Based on Mutual Sampling for Unified Prediction of Continuous and Discontinuous Antibody Binding Sites
by: You, Zhangyu, et al.
Published: (2025)
by: You, Zhangyu, et al.
Published: (2025)
ProtChatGPT: Towards Understanding Proteins with Large Language Models
by: Wang, Chao, et al.
Published: (2024)
by: Wang, Chao, et al.
Published: (2024)
Scaffold Splits Overestimate Virtual Screening Performance
by: Guo, Qianrong, et al.
Published: (2024)
by: Guo, Qianrong, et al.
Published: (2024)
BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task Tuning
by: Pei, Qizhi, et al.
Published: (2024)
by: Pei, Qizhi, et al.
Published: (2024)
Exploring Drug Safety Through Knowledge Graphs: Protein Kinase Inhibitors as a Case Study
by: Jackson, David, et al.
Published: (2026)
by: Jackson, David, et al.
Published: (2026)
Graph Representation Learning Strategies for Omics Data: A Case Study on Parkinson's Disease
by: de Lope, Elisa Gómez, et al.
Published: (2024)
by: de Lope, Elisa Gómez, et al.
Published: (2024)
ESM All-Atom: Multi-scale Protein Language Model for Unified Molecular Modeling
by: Zheng, Kangjie, et al.
Published: (2024)
by: Zheng, Kangjie, et al.
Published: (2024)
PERC: a suite of software tools for the curation of cryoEM data with application to simulation, modelling and machine learning
by: Costa-Gomes, Beatriz, et al.
Published: (2025)
by: Costa-Gomes, Beatriz, et al.
Published: (2025)
Pre-Training on Large-Scale Generated Docking Conformations with HelixDock to Unlock the Potential of Protein-ligand Structure Prediction Models
by: Liu, Lihang, et al.
Published: (2023)
by: Liu, Lihang, et al.
Published: (2023)
Boltzmann-Aligned Inverse Folding Model as a Predictor of Mutational Effects on Protein-Protein Interactions
by: Jiao, Xiaoran, et al.
Published: (2024)
by: Jiao, Xiaoran, et al.
Published: (2024)
AAVDiff: Experimental Validation of Enhanced Viability and Diversity in Recombinant Adeno-Associated Virus (AAV) Capsids through Diffusion Generation
by: Liu, Lijun, et al.
Published: (2024)
by: Liu, Lijun, et al.
Published: (2024)
Quantifying Cross-Attention Interaction in Transformers for Interpreting TCR-pMHC Binding
by: Li, Jiarui, et al.
Published: (2025)
by: Li, Jiarui, et al.
Published: (2025)
CAME-AB: Cross-Modality Attention with Mixture-of-Experts for Antibody Binding Site Prediction
by: Li, Hongzong, et al.
Published: (2025)
by: Li, Hongzong, et al.
Published: (2025)
CryoSAMU: Enhancing 3D Cryo-EM Density Maps of Protein Structures at Intermediate Resolution with Structure-Aware Multimodal U-Nets
by: Zhang, Chenwei, et al.
Published: (2025)
by: Zhang, Chenwei, et al.
Published: (2025)
De novo Drug Design using Reinforcement Learning with Multiple GPT Agents
by: Hu, Xiuyuan, et al.
Published: (2023)
by: Hu, Xiuyuan, et al.
Published: (2023)
Re-evaluating sample efficiency in de novo molecule generation
by: Thomas, Morgan, et al.
Published: (2022)
by: Thomas, Morgan, et al.
Published: (2022)
Empirical Evidence for the Fragment level Understanding on Drug Molecular Structure of LLMs
by: Hu, Xiuyuan, et al.
Published: (2024)
by: Hu, Xiuyuan, et al.
Published: (2024)
Deep Neural Network-Based Prediction of B-Cell Epitopes for SARS-CoV and SARS-CoV-2: Enhancing Vaccine Design through Machine Learning
by: Shi, Xinyu, et al.
Published: (2024)
by: Shi, Xinyu, et al.
Published: (2024)
Gradient GA: Gradient Genetic Algorithm for Drug Molecular Design
by: Zhuang, Chris, et al.
Published: (2025)
by: Zhuang, Chris, et al.
Published: (2025)
Leveraging Partial SMILES Validation Scheme for Enhanced Drug Design in Reinforcement Learning Frameworks
by: Wang, Xinyu, et al.
Published: (2025)
by: Wang, Xinyu, et al.
Published: (2025)
Impact of Domain Knowledge and Multi-Modality on Intelligent Molecular Property Prediction: A Systematic Survey
by: Kuang, Taojie, et al.
Published: (2024)
by: Kuang, Taojie, et al.
Published: (2024)
Accelerating Black-Box Molecular Property Optimization by Adaptively Learning Sparse Subspaces
by: Sorourifar, Farshud, et al.
Published: (2024)
by: Sorourifar, Farshud, et al.
Published: (2024)
Clustering for Protein Representation Learning
by: Quan, Ruijie, et al.
Published: (2024)
by: Quan, Ruijie, et al.
Published: (2024)
Enhancing Cryo-EM Density Map Segmentation in Phenix for Improved Atomic Model Building
by: Zhang, Chenwei
Published: (2026)
by: Zhang, Chenwei
Published: (2026)
A Deep Neural Network -- Mechanistic Hybrid Model to Predict Pharmacokinetics in Rat
by: Führer, Florian, et al.
Published: (2023)
by: Führer, Florian, et al.
Published: (2023)
Similar Items
-
CryoBench: Diverse and challenging datasets for the heterogeneity problem in cryo-EM
by: Jeon, Minkyu, et al.
Published: (2024) -
Aligning Large Language Models and Geometric Deep Models for Protein Representation
by: Shu, Dong, et al.
Published: (2024) -
Precise Antigen-Antibody Structure Predictions Enhance Antibody Development with HelixFold-Multimer
by: Gao, Jie, et al.
Published: (2024) -
PepHarmony: A Multi-View Contrastive Learning Framework for Integrated Sequence and Structure-Based Peptide Encoding
by: Zhang, Ruochi, et al.
Published: (2024) -
ProteinGPT: Multimodal LLM for Protein Property Prediction and Structure Understanding
by: Xiao, Yijia, et al.
Published: (2024)