:: Library Catalog

Cover Image

Saved in:

Bibliographic Details
Main Authors:	Ilyas, Maham, Yasmeen, Abida, Khan, Yaser Daanial, Mahmood, Arif
Format:	Preprint
Published:	2024
Subjects:	Machine Learning Cell Behavior
Online Access:	https://arxiv.org/abs/2410.09968
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

Embedding-based Multimodal Learning on Pan-Squamous Cell Carcinomas for Improved Survival Outcomes
by: Waqas, Asim, et al.
Published: (2024)

Transfer Learning for T-Cell Response Prediction
by: Stadelmaier, Josua, et al.
Published: (2024)

Why Attention Graphs Are All We Need: Pioneering Hierarchical Classification of Hematologic Cell Populations with LeukoGraph
by: Mojarrad, Fatemeh Nassajian, et al.
Published: (2024)

Engineering morphogenesis of cell clusters with differentiable programming
by: Deshpande, Ramya, et al.
Published: (2024)

Towards generalizable single-cell perturbation modeling via the Conditional Monge Gap
by: Driessen, Alice, et al.
Published: (2025)

Learning Model Parameter Dynamics in a Combination Therapy for Bladder Cancer from Sparse Biological Data
by: Olumoyin, Kayode, et al.
Published: (2025)

scMamba: A Scalable Foundation Model for Single-Cell Multi-Omics Integration Beyond Highly Variable Feature Selection
by: Yuan, Zhen, et al.
Published: (2025)

SSRCA: a novel machine learning pipeline to perform sensitivity analysis for agent-based models
by: Rohr, Edward H., et al.
Published: (2025)

Non-invasive maturity assessment of iPSC-CMs based on optical maturity characteristics using interpretable AI
by: Scheurer, Fabian, et al.
Published: (2025)

Season combinatorial intervention predictions with Salt & Peper
by: Gaudelet, Thomas, et al.
Published: (2024)

Long-range gene expression prediction with token alignment of large language model
by: Honig, Edouardo, et al.
Published: (2024)

Causal Circuit Tracing Reveals Distinct Computational Architectures in Single-Cell Foundation Models: Inhibitory Dominance, Biological Coherence, and Cross-Model Convergence
by: Kendiukhov, Ihor
Published: (2026)

HEIST: A Graph Foundation Model for Spatial Transcriptomics and Proteomics Data
by: Madhu, Hiren, et al.
Published: (2025)

STRAND: Sequence-Conditioned Transport for Single-Cell Perturbations
by: Fu, Boyang, et al.
Published: (2026)

Discovery of a Hematopoietic Manifold in scGPT Yields a Method for Extracting Performant Algorithms from Biological Foundation Model Internals
by: Kendiukhov, Ihor
Published: (2026)

Sparse autoencoders reveal organized biological knowledge but minimal regulatory logic in single-cell foundation models: a comparative atlas of Geneformer and scGPT
by: Kendiukhov, Ihor
Published: (2026)

HemaGraph: Breaking Barriers in Hematologic Single Cell Classification with Graph Attention
by: Bini, Lorenzo, et al.
Published: (2024)

Persistent pseudopod splitting is an effective chemotaxis strategy in shallow gradients
by: Alonso, Albert, et al.
Published: (2024)

Scientific Hypothesis Generation by a Large Language Model: Laboratory Validation in Breast Cancer Treatment
by: Abdel-Rehim, Abbi, et al.
Published: (2024)

Modeling Adoptive Cell Therapy in Bladder Cancer from Sparse Biological Data using PINNs
by: Olumoyin, Kayode, et al.
Published: (2025)

Modeling non-genetic information dynamics in cells using reservoir computing
by: Niraula, Dipesh, et al.
Published: (2023)

Run-and-tumble chemotaxis using reinforcement learning
by: Pramanik, Ramesh, et al.
Published: (2025)

VCWorld: A Biological World Model for Virtual Cell Simulation
by: Wei, Zhijian, et al.
Published: (2025)

RxRx3-core: Benchmarking drug-target interactions in High-Content Microscopy
by: Kraus, Oren, et al.
Published: (2025)

scI2CL: Effectively Integrating Single-cell Multi-omics by Intra- and Inter-omics Contrastive Learning
by: Liu, Wuchao, et al.
Published: (2025)

SynthPert: Enhancing LLM Biological Reasoning via Synthetic Reasoning Traces for Cellular Perturbation Prediction
by: Phillips, Lawrence, et al.
Published: (2025)

The Inhibition of B16-F10 Mouse Melanoma Cell Proliferation in Increased Concentration Levels of Theophylline
by: Khan, Faiza Hasib, et al.
Published: (2025)

LapDDPM: A Conditional Graph Diffusion Model for scRNA-seq Generation with Spectral Adversarial Perturbations
by: Bini, Lorenzo, et al.
Published: (2025)

Bayesian Calibration and Model Assessment of Cell Migration Dynamics with Surrogate Model Integration
by: Schenk, Christina, et al.
Published: (2025)

FP-IRL: Fokker--Planck Inverse Reinforcement Learning -- A Physics-Constrained Approach to Markov Decision Processes
by: Huang, Chengyang, et al.
Published: (2023)

DCENWCNet: A Deep CNN Ensemble Network for White Blood Cell Classification with LIME-Based Explainability
by: Dhibar, Sibasish
Published: (2025)

An energy-based mathematical model of actin-driven protrusions in eukaryotic chemotaxis
by: Johnson, Samuel W. S., et al.
Published: (2025)

An individual-based model to explore the impact of psychological stress on immune infiltration into tumour spheroids
by: Leschiera, Emma, et al.
Published: (2023)

Bridging Classical Molecular Dynamics and Quantum Foundations for Comprehensive Protein Structural Analysis
by: Roosan, Don, et al.
Published: (2025)

DiffEx: Explaining a Classifier with Diffusion Models to Identify Microscopic Cellular Variations
by: Bourou, Anis, et al.
Published: (2025)

Topological constraints on self-organisation in locally interacting systems
by: Sacco, Francesco, et al.
Published: (2025)

Large Language Models Meet Virtual Cell: A Survey
by: Li, Krinos, et al.
Published: (2025)

Deep learning of geometrical cell division rules
by: Durrmeyer, Alexandre, et al.
Published: (2025)

CellFlux: Simulating Cellular Morphology Changes via Flow Matching
by: Zhang, Yuhui, et al.
Published: (2025)

A mathematical model for smooth muscle cell phenotype switching in atherosclerotic plaque
by: Ndenda, Joseph P., et al.
Published: (2024)