Hybrid Spatial Representations for Species Distribution Modeling
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arXiv
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| Format: | Preprint |
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2024
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| _version_ | 1866909359567536128 |
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| author | Yuan, Shiran Zhao, Hao |
| author_facet | Yuan, Shiran Zhao, Hao |
| contents | We address an important problem in ecology called Species Distribution Modeling (SDM), whose goal is to predict whether a species exists at a certain position on Earth. In particular, we tackle a challenging version of this task, where we learn from presence-only data in a community-sourced dataset, model a large number of species simultaneously, and do not use any additional environmental information. Previous work has used neural implicit representations to construct models that achieve promising results. However, implicit representations often generate predictions of limited spatial precision. We attribute this limitation to their inherently global formulation and inability to effectively capture local feature variations. This issue is especially pronounced with presence-only data and a large number of species. To address this, we propose a hybrid embedding scheme that combines both implicit and explicit embeddings. Specifically, the explicit embedding is implemented with a multiresolution hashgrid, enabling our models to better capture local information. Experiments demonstrate that our results exceed other works by a large margin on various standard benchmarks, and that the hybrid representation is better than both purely implicit and explicit ones. Qualitative visualizations and comprehensive ablation studies reveal that our hybrid representation successfully addresses the two main challenges. Our code is open-sourced at https://github.com/Shiran-Yuan/HSR-SDM. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2410_10937 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Hybrid Spatial Representations for Species Distribution Modeling Yuan, Shiran Zhao, Hao Machine Learning Computer Vision and Pattern Recognition We address an important problem in ecology called Species Distribution Modeling (SDM), whose goal is to predict whether a species exists at a certain position on Earth. In particular, we tackle a challenging version of this task, where we learn from presence-only data in a community-sourced dataset, model a large number of species simultaneously, and do not use any additional environmental information. Previous work has used neural implicit representations to construct models that achieve promising results. However, implicit representations often generate predictions of limited spatial precision. We attribute this limitation to their inherently global formulation and inability to effectively capture local feature variations. This issue is especially pronounced with presence-only data and a large number of species. To address this, we propose a hybrid embedding scheme that combines both implicit and explicit embeddings. Specifically, the explicit embedding is implemented with a multiresolution hashgrid, enabling our models to better capture local information. Experiments demonstrate that our results exceed other works by a large margin on various standard benchmarks, and that the hybrid representation is better than both purely implicit and explicit ones. Qualitative visualizations and comprehensive ablation studies reveal that our hybrid representation successfully addresses the two main challenges. Our code is open-sourced at https://github.com/Shiran-Yuan/HSR-SDM. |
| title | Hybrid Spatial Representations for Species Distribution Modeling |
| topic | Machine Learning Computer Vision and Pattern Recognition |
| url | https://arxiv.org/abs/2410.10937 |