FlexMol: A Flexible Toolkit for Benchmarking Molecular Relational Learning
Fuente:
arXiv
Saved in:
| Main Authors: | Liu, Sizhe, Xia, Jun, Zhang, Lecheng, Liu, Yuchen, Liu, Yue, Du, Wenjie, Gao, Zhangyang, Hu, Bozhen, Tan, Cheng, Xiang, Hongxin, Li, Stan Z. |
|---|---|
| Format: | Preprint |
| Published: |
2024
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
A Graph is Worth $K$ Words: Euclideanizing Graph using Pure Transformer
by: Gao, Zhangyang, et al.
Published: (2024)
by: Gao, Zhangyang, et al.
Published: (2024)
Cross-Gate MLP with Protein Complex Invariant Embedding is A One-Shot Antibody Designer
by: Tan, Cheng, et al.
Published: (2023)
by: Tan, Cheng, et al.
Published: (2023)
PFMBench: Protein Foundation Model Benchmark
by: Gao, Zhangyang, et al.
Published: (2025)
by: Gao, Zhangyang, et al.
Published: (2025)
NovoBench: Benchmarking Deep Learning-based De Novo Peptide Sequencing Methods in Proteomics
by: Zhou, Jingbo, et al.
Published: (2024)
by: Zhou, Jingbo, et al.
Published: (2024)
RDesign: Hierarchical Data-efficient Representation Learning for Tertiary Structure-based RNA Design
by: Tan, Cheng, et al.
Published: (2023)
by: Tan, Cheng, et al.
Published: (2023)
Multimodal Regression for Enzyme Turnover Rates Prediction
by: Hu, Bozhen, et al.
Published: (2025)
by: Hu, Bozhen, et al.
Published: (2025)
MolTC: Towards Molecular Relational Modeling In Language Models
by: Fang, Junfeng, et al.
Published: (2024)
by: Fang, Junfeng, et al.
Published: (2024)
PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Prediction
by: Wu, Lirong, et al.
Published: (2024)
by: Wu, Lirong, et al.
Published: (2024)
Advances of Deep Learning in Protein Science: A Comprehensive Survey
by: Hu, Bozhen, et al.
Published: (2024)
by: Hu, Bozhen, et al.
Published: (2024)
AdaNovo: Adaptive \emph{De Novo} Peptide Sequencing with Conditional Mutual Information
by: Xia, Jun, et al.
Published: (2024)
by: Xia, Jun, et al.
Published: (2024)
MeToken: Uniform Micro-environment Token Boosts Post-Translational Modification Prediction
by: Tan, Cheng, et al.
Published: (2024)
by: Tan, Cheng, et al.
Published: (2024)
FoldToken2: Learning compact, invariant and generative protein structure language
by: Gao, Zhangyang, et al.
Published: (2024)
by: Gao, Zhangyang, et al.
Published: (2024)
Re-Dock: Towards Flexible and Realistic Molecular Docking with Diffusion Bridge
by: Huang, Yufei, et al.
Published: (2024)
by: Huang, Yufei, et al.
Published: (2024)
Deep Manifold Graph Auto-Encoder for Attributed Graph Embedding
by: Hu, Bozhen, et al.
Published: (2024)
by: Hu, Bozhen, et al.
Published: (2024)
Deep Manifold Transformation for Protein Representation Learning
by: Hu, Bozhen, et al.
Published: (2024)
by: Hu, Bozhen, et al.
Published: (2024)
SimVPv2: Towards Simple yet Powerful Spatiotemporal Predictive Learning
by: Tan, Cheng, et al.
Published: (2022)
by: Tan, Cheng, et al.
Published: (2022)
Relation-Aware Equivariant Graph Networks for Epitope-Unknown Antibody Design and Specificity Optimization
by: Wu, Lirong, et al.
Published: (2024)
by: Wu, Lirong, et al.
Published: (2024)
An Empirical Study: Extensive Deep Temporal Point Process
by: Lin, Haitao, et al.
Published: (2021)
by: Lin, Haitao, et al.
Published: (2021)
EDBench: Large-Scale Electron Density Data for Molecular Modeling
by: Xiang, Hongxin, et al.
Published: (2025)
by: Xiang, Hongxin, et al.
Published: (2025)
Describing and Sharing Molecular Visualizations Using the MolViewSpec Toolkit
by: Sebastian Bittrich, et al.
Published: (2024)
by: Sebastian Bittrich, et al.
Published: (2024)
USTEP: Spatio-Temporal Predictive Learning under A Unified View
by: Tan, Cheng, et al.
Published: (2023)
by: Tan, Cheng, et al.
Published: (2023)
ModuLM: Enabling Modular and Multimodal Molecular Relational Learning with Large Language Models
by: Chen, Zhuo, et al.
Published: (2025)
by: Chen, Zhuo, et al.
Published: (2025)
FlexGS: Train Once, Deploy Everywhere with Many-in-One Flexible 3D Gaussian Splatting
by: Liu, Hengyu, et al.
Published: (2025)
by: Liu, Hengyu, et al.
Published: (2025)
RoFt-Mol: Benchmarking Robust Fine-Tuning with Molecular Graph Foundation Models
by: Liu, Shikun, et al.
Published: (2025)
by: Liu, Shikun, et al.
Published: (2025)
UBio-MolFM: A Universal Molecular Foundation Model for Bio-Systems
by: Huang, Lin, et al.
Published: (2026)
by: Huang, Lin, et al.
Published: (2026)
Refold: Refining Protein Inverse Folding with Efficient Structural Matching and Fusion
by: Zhu, Yiran, et al.
Published: (2026)
by: Zhu, Yiran, et al.
Published: (2026)
FlexSAN: A Flexible Regenerative Satellite Access Network Architecture
by: Kong, Weize, et al.
Published: (2025)
by: Kong, Weize, et al.
Published: (2025)
G2PDiffusion: Cross-Species Genotype-to-Phenotype Prediction via Evolutionary Diffusion
by: Liu, Mengdi, et al.
Published: (2025)
by: Liu, Mengdi, et al.
Published: (2025)
dyAb: Flow Matching for Flexible Antibody Design with AlphaFold-driven Pre-binding Antigen
by: Tan, Cheng, et al.
Published: (2025)
by: Tan, Cheng, et al.
Published: (2025)
AIGVE-Tool: AI-Generated Video Evaluation Toolkit with Multifaceted Benchmark
by: Xiang, Xinhao, et al.
Published: (2025)
by: Xiang, Xinhao, et al.
Published: (2025)
MolGround: A Benchmark for Molecular Grounding
by: Wu, Jiaxin, et al.
Published: (2025)
by: Wu, Jiaxin, et al.
Published: (2025)
MolQAE: Quantum Autoencoder for Molecular Representation Learning
by: Pan, Yi, et al.
Published: (2025)
by: Pan, Yi, et al.
Published: (2025)
FlexQuant: A Flexible and Efficient Dynamic Precision Switching Framework for LLM Quantization
by: Liu, Fangxin, et al.
Published: (2025)
by: Liu, Fangxin, et al.
Published: (2025)
AlphaFold Database Debiasing for Robust Inverse Folding
by: Tan, Cheng, et al.
Published: (2025)
by: Tan, Cheng, et al.
Published: (2025)
FoldToken: Learning Protein Language via Vector Quantization and Beyond
by: Gao, Zhangyang, et al.
Published: (2024)
by: Gao, Zhangyang, et al.
Published: (2024)
FlexPara: Flexible Neural Surface Parameterization
by: Zhao, Yuming, et al.
Published: (2025)
by: Zhao, Yuming, et al.
Published: (2025)
Peer Review as A Multi-Turn and Long-Context Dialogue with Role-Based Interactions
by: Tan, Cheng, et al.
Published: (2024)
by: Tan, Cheng, et al.
Published: (2024)
FlexCache: Flexible Approximate Cache System for Video Diffusion
by: Sun, Desen, et al.
Published: (2024)
by: Sun, Desen, et al.
Published: (2024)
Deciphering RNA Secondary Structure Prediction: A Probabilistic K-Rook Matching Perspective
by: Tan, Cheng, et al.
Published: (2022)
by: Tan, Cheng, et al.
Published: (2022)
FlexLoRA: Entropy-Guided Flexible Low-Rank Adaptation
by: Liu, Muqing, et al.
Published: (2026)
by: Liu, Muqing, et al.
Published: (2026)
Similar Items
-
A Graph is Worth $K$ Words: Euclideanizing Graph using Pure Transformer
by: Gao, Zhangyang, et al.
Published: (2024) -
Cross-Gate MLP with Protein Complex Invariant Embedding is A One-Shot Antibody Designer
by: Tan, Cheng, et al.
Published: (2023) -
PFMBench: Protein Foundation Model Benchmark
by: Gao, Zhangyang, et al.
Published: (2025) -
NovoBench: Benchmarking Deep Learning-based De Novo Peptide Sequencing Methods in Proteomics
by: Zhou, Jingbo, et al.
Published: (2024) -
RDesign: Hierarchical Data-efficient Representation Learning for Tertiary Structure-based RNA Design
by: Tan, Cheng, et al.
Published: (2023)