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| Main Authors: | , , , , , , , |
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| Format: | Preprint |
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2024
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| Online Access: | https://arxiv.org/abs/2410.15018 |
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| _version_ | 1866913663599771648 |
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| author | Mariani, Arturo Senocrate, Federico Mikiel-Hunter, Jason McAlpine, David Beiderbeck, Barbara Pecka, Michael Lin, Kevin Kreuz, Thomas |
| author_facet | Mariani, Arturo Senocrate, Federico Mikiel-Hunter, Jason McAlpine, David Beiderbeck, Barbara Pecka, Michael Lin, Kevin Kreuz, Thomas |
| contents | Background: In Kreuz et al., J Neurosci Methods 381, 109703 (2022) two methods were proposed that perform latency correction, i.e., optimize the spike time alignment of sparse neuronal spike trains with well defined global spiking events. The first one based on direct shifts is fast but uses only partial latency information, while the other one makes use of the full information but relies on the computationally costly simulated annealing. Both methods reach their limits and can become unreliable when successive global events are not sufficiently separated or even overlap.
New Method: Here we propose an iterative scheme that combines the advantages of the two original methods by using in each step as much of the latency information as possible and by employing a very fast extrapolation direct shift method instead of the much slower simulated annealing.
Results: We illustrate the effectiveness and the improved performance, measured in terms of the relative shift error, of the new iterative scheme not only on simulated data with known ground truths but also on single-unit recordings from two medial superior olive neurons of a gerbil.
Comparison with Existing Method(s): The iterative scheme outperforms the existing approaches on both the simulated and the experimental data. Due to its low computational demands, and in contrast to simulated annealing, it can also be applied to very large datasets.
Conclusions: The new method generalizes and improves on the original method both in terms of accuracy and speed. Importantly, it is the only method that allows to disentangle global events with overlap. |
| format | Preprint |
| id |
arxiv_https___arxiv_org_abs_2410_15018 |
| institution | arXiv |
| publishDate | 2024 |
| record_format | arxiv |
| spellingShingle | Latency correction in sparse neuronal spike trains with overlapping global events Mariani, Arturo Senocrate, Federico Mikiel-Hunter, Jason McAlpine, David Beiderbeck, Barbara Pecka, Michael Lin, Kevin Kreuz, Thomas Neurons and Cognition Biological Physics Data Analysis, Statistics and Probability Medical Physics Applications 62-04, 65-04, 92-04, 92C05, 92C42 G.2.3; G.3; G.4; I.5.3; J.3 Background: In Kreuz et al., J Neurosci Methods 381, 109703 (2022) two methods were proposed that perform latency correction, i.e., optimize the spike time alignment of sparse neuronal spike trains with well defined global spiking events. The first one based on direct shifts is fast but uses only partial latency information, while the other one makes use of the full information but relies on the computationally costly simulated annealing. Both methods reach their limits and can become unreliable when successive global events are not sufficiently separated or even overlap. New Method: Here we propose an iterative scheme that combines the advantages of the two original methods by using in each step as much of the latency information as possible and by employing a very fast extrapolation direct shift method instead of the much slower simulated annealing. Results: We illustrate the effectiveness and the improved performance, measured in terms of the relative shift error, of the new iterative scheme not only on simulated data with known ground truths but also on single-unit recordings from two medial superior olive neurons of a gerbil. Comparison with Existing Method(s): The iterative scheme outperforms the existing approaches on both the simulated and the experimental data. Due to its low computational demands, and in contrast to simulated annealing, it can also be applied to very large datasets. Conclusions: The new method generalizes and improves on the original method both in terms of accuracy and speed. Importantly, it is the only method that allows to disentangle global events with overlap. |
| title | Latency correction in sparse neuronal spike trains with overlapping global events |
| topic | Neurons and Cognition Biological Physics Data Analysis, Statistics and Probability Medical Physics Applications 62-04, 65-04, 92-04, 92C05, 92C42 G.2.3; G.3; G.4; I.5.3; J.3 |
| url | https://arxiv.org/abs/2410.15018 |