A mathematical framework to study organising principles in graphical representations of biochemical processes
Fuente:
arXiv
Saved in:
| Main Authors: | Chaudhuri, Adittya, Köhl, Ralf, Wolkenhauer, Olaf |
|---|---|
| Format: | Preprint |
| Published: |
2024
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Understanding how chromatin folding and enzyme competition affect rugged epigenetic landscapes
by: Stepanova, Daria, et al.
Published: (2024)
by: Stepanova, Daria, et al.
Published: (2024)
Modeling GRNs with a Probabilistic Categorical Framework
by: Jia, Yiyang, et al.
Published: (2025)
by: Jia, Yiyang, et al.
Published: (2025)
HyperNetWalk: A Unified Framework for Personalized and Population-Level Cancer Driver Gene Identification via Multi-Network Hypergraph Diffusion
by: Xu, Xueqing, et al.
Published: (2026)
by: Xu, Xueqing, et al.
Published: (2026)
Mathematical modeling of tumor-immune interactions: methods, applications, and future perspectives
by: Li, Chenghang, et al.
Published: (2025)
by: Li, Chenghang, et al.
Published: (2025)
Identifying expanding TCR clonotypes with a longitudinal Bayesian mixture model and their associations with cancer patient prognosis, metastasis-directed therapy, and VJ gene enrichment
by: Swanson, David, et al.
Published: (2026)
by: Swanson, David, et al.
Published: (2026)
Accessibility of Modified NK Fitness Landscapes
by: Nunns, Henry, et al.
Published: (2025)
by: Nunns, Henry, et al.
Published: (2025)
Frobenius and commutative pseudomonoids in the bicategory of spans
by: Contreras, Ivan, et al.
Published: (2023)
by: Contreras, Ivan, et al.
Published: (2023)
Bundling instability of lophotrichous bacteria
by: Park, Jeungeun, et al.
Published: (2024)
by: Park, Jeungeun, et al.
Published: (2024)
Head and Eye Control in Persons with Low Vision during Urban Navigation
by: Beheshti, Mahya, et al.
Published: (2025)
by: Beheshti, Mahya, et al.
Published: (2025)
Bumblebees Exhibit Adaptive Flapping Responses to Air Disturbances
by: Jakobi, Tim, et al.
Published: (2024)
by: Jakobi, Tim, et al.
Published: (2024)
A Reanalysis of the FDA's Benefit--Risk Assessment of Moderna's mRNA-1273 COVID Vaccine Based on a Model Incorporating Benefits Derived from Prior COVID Infection
by: Bourdon, Paul S., et al.
Published: (2024)
by: Bourdon, Paul S., et al.
Published: (2024)
Pollutant-induced changes in fish pigmentation and spatial patterns
by: Chowdhury, Pranali Roy, et al.
Published: (2026)
by: Chowdhury, Pranali Roy, et al.
Published: (2026)
Simulating stochastic population dynamics: The Linear Noise Approximation can capture non-linear phenomena
by: Truman-Williams, Frederick, et al.
Published: (2025)
by: Truman-Williams, Frederick, et al.
Published: (2025)
Anatomically aware simulation of patient-specific glioblastoma xenografts
by: Malik, Adam A., et al.
Published: (2024)
by: Malik, Adam A., et al.
Published: (2024)
The least subtopos containing the discrete skeleton of $Ω$
by: Menni, Matí as
Published: (2024)
by: Menni, Matí as
Published: (2024)
Smoothing in linear multicompartment biological processes subject to stochastic input
by: Browning, Alexander P, et al.
Published: (2023)
by: Browning, Alexander P, et al.
Published: (2023)
A closer look at parameter identifiability, model selection and handling of censored data with Bayesian Inference in mathematical models of tumour growth
by: Porthiyas, Jamie, et al.
Published: (2023)
by: Porthiyas, Jamie, et al.
Published: (2023)
Reaction-diffusion models of invasive tree pest spread: quantifying the expansion of oak processionary moth in the UK
by: McKeown, Jamie P., et al.
Published: (2025)
by: McKeown, Jamie P., et al.
Published: (2025)
Expected and minimal values of a universal tree balance index
by: Manojlović, Veselin, et al.
Published: (2025)
by: Manojlović, Veselin, et al.
Published: (2025)
Categorical foundations of discrete dynamical systems
by: Carranza, Daniel, et al.
Published: (2025)
by: Carranza, Daniel, et al.
Published: (2025)
A compositional account of motifs, mechanisms, and dynamics in biochemical regulatory networks
by: Aduddell, Rebekah, et al.
Published: (2023)
by: Aduddell, Rebekah, et al.
Published: (2023)
How Honeybees Perceive and Traverse Apertures
by: Jakobi, Timothy, et al.
Published: (2024)
by: Jakobi, Timothy, et al.
Published: (2024)
A mathematical model for cognitive structures and processes underlying innovations
by: Jost, Jürgen, et al.
Published: (2024)
by: Jost, Jürgen, et al.
Published: (2024)
Toward the effective 2-topos
by: Awodey, Steve, et al.
Published: (2025)
by: Awodey, Steve, et al.
Published: (2025)
Lawvere's fourth open problem: Levels in the topos of symmetric simplicial sets
by: Hora, Ryuya, et al.
Published: (2025)
by: Hora, Ryuya, et al.
Published: (2025)
A Criterion for Categories on which every Grothendieck Topology is Rigid
by: Marquès, Jérémie
Published: (2024)
by: Marquès, Jérémie
Published: (2024)
The Grothendieck construction for delta lenses
by: Clarke, Bryce
Published: (2025)
by: Clarke, Bryce
Published: (2025)
Double categories of relations relative to factorisation systems
by: Hoshino, Keisuke, et al.
Published: (2023)
by: Hoshino, Keisuke, et al.
Published: (2023)
Relationship between Decimal Hill Coefficient, Intermediate Processes and Mesoscopic Fluctuations
by: Hernández-García, Manuel Eduardo, et al.
Published: (2023)
by: Hernández-García, Manuel Eduardo, et al.
Published: (2023)
Rewriting Structured Cospans
by: Cicala, Daniel
Published: (2020)
by: Cicala, Daniel
Published: (2020)
Groupoid G-spans and matrices over group rings
by: Kock, Joachim, et al.
Published: (2026)
by: Kock, Joachim, et al.
Published: (2026)
Think before you fit: parameter identifiability, sensitivity and uncertainty in systems biology models
by: Preston, Simon P., et al.
Published: (2025)
by: Preston, Simon P., et al.
Published: (2025)
From coextensive varieties to the Gaeta topos
by: Zuluaga, William
Published: (2022)
by: Zuluaga, William
Published: (2022)
Joint graphical model estimation using Stein-type shrinkage for fast large scale network inference in scRNAseq data
by: Vo, Duong H. T., et al.
Published: (2025)
by: Vo, Duong H. T., et al.
Published: (2025)
Unifying Weak Independence and Signal Hierarchy Theory: Extended Biological Petri Net Formalism with Application to Vibrio fischeri Quorum Sensing
by: Simao, Eugenio
Published: (2025)
by: Simao, Eugenio
Published: (2025)
Unsupervised detection and fitness estimation of emerging SARS-CoV-2 variants. Application to wastewater samples (ANRS0160)
by: Lefebvre, Alexandra, et al.
Published: (2025)
by: Lefebvre, Alexandra, et al.
Published: (2025)
Dynamic optimization of volatile fatty acids to enrich biohydrogen production using a deep learning neural network
by: Mahmoodi-Eshkaftaki, Mahmood, et al.
Published: (2022)
by: Mahmoodi-Eshkaftaki, Mahmood, et al.
Published: (2022)
A network-driven framework for enhancing gene-disease association studies in coronary artery disease
by: Mohammad, Gutama Ibrahim, et al.
Published: (2025)
by: Mohammad, Gutama Ibrahim, et al.
Published: (2025)
Quantale-valued maps and partial maps
by: Shen, Lili, et al.
Published: (2024)
by: Shen, Lili, et al.
Published: (2024)
Preservation of Loewy Diagrams Under Exact Functors
by: Rupert, Matthew
Published: (2023)
by: Rupert, Matthew
Published: (2023)
Similar Items
-
Understanding how chromatin folding and enzyme competition affect rugged epigenetic landscapes
by: Stepanova, Daria, et al.
Published: (2024) -
Modeling GRNs with a Probabilistic Categorical Framework
by: Jia, Yiyang, et al.
Published: (2025) -
HyperNetWalk: A Unified Framework for Personalized and Population-Level Cancer Driver Gene Identification via Multi-Network Hypergraph Diffusion
by: Xu, Xueqing, et al.
Published: (2026) -
Mathematical modeling of tumor-immune interactions: methods, applications, and future perspectives
by: Li, Chenghang, et al.
Published: (2025) -
Identifying expanding TCR clonotypes with a longitudinal Bayesian mixture model and their associations with cancer patient prognosis, metastasis-directed therapy, and VJ gene enrichment
by: Swanson, David, et al.
Published: (2026)